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METTL1-mediated m7G modification of valine tRNAs drives metabolic adaptation in pancreatic ductal adenocarcinoma cells
Jiabei Zhu, Qi Zhang, Douglas Evans, Rui Su, Qiuhui Pan, Ajay Goel
Jiabei Zhu, Qi Zhang, Douglas Evans, Rui Su, Qiuhui Pan, Ajay Goel
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Research Article Gastroenterology Oncology

METTL1-mediated m7G modification of valine tRNAs drives metabolic adaptation in pancreatic ductal adenocarcinoma cells

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Abstract

Transfer RNA (tRNA) modifications play a critical role in regulating codon-specific mRNA translation and enabling tumor cell adaptation. The RNA methyltransferase 1 (METTL1) installs N7-methylguanosine (m7G) modifications on tRNAs, thereby shaping codon usage and translational output. However, the function and mechanistic contribution of the METTL1/tRNA axis in pancreatic ductal adenocarcinoma (PDAC) remain poorly defined. Here, we showed that METTL1 was overexpressed in PDAC tissues and that elevated METTL1 expression was associated with poor patient survival. Genetic ablation of METTL1 markedly suppressed PDAC cell proliferation, migration, and tumor growth in vitro and in vivo. Mechanistically, METTL1 loss selectively reduced m7G-modified valine tRNAs — particularly Val-AAC, Val-CAC, and Val-TAC — leading to impaired translation of valine-enriched OXPHOS transcripts. As a consequence, METTL1 deficiency disrupted mitochondrial respiration and energy production in PDAC cells. Consistent with this model, valine tRNA levels were elevated in PDAC tissues, and their selective depletion phenocopied METTL1 loss by impairing mitochondrial bioenergetics and tumor cell fitness. Thus, the METTL1/valine tRNA axis promoted PDAC progression through codon-dependent translational control of the mitochondrial electron transport chain and oxidative metabolism. Together, our findings identify a METTL1/tRNA/mitochondria signaling axis as a metabolic vulnerability and a promising therapeutic target in pancreatic cancer.

Authors

Jiabei Zhu, Qi Zhang, Douglas Evans, Rui Su, Qiuhui Pan, Ajay Goel

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Figure 5

METTL1 depletion leads to valine codon–biased changes in mRNA translation.

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METTL1 depletion leads to valine codon–biased changes in mRNA translatio...
(A) Western blotting analysis of global protein synthesis in the control and METTL1-KO groups from BxPC-3 and MiaPaCa-2 cells. (B and C) Ribosome fractionation by sucrose density gradient centrifugation in the control and METTL1-KO groups from BxPC-3 (B) and MiaPaCa-2 (C) cells. (D) Scatterplot of TE in METTL1-KO versus control cells (Up). TE was calculated by dividing the polysome-binding signals by the input RNA-seq signals. Venn diagram of overlapping genes with downregulated TE (Down-TE) in BxPC-3 and MiaPaCa-2 cells (down). (E and F) GO (E) and KEGG pathway (F) enrichment analyses of the overlapping genes with downregulated TE in BxPC-3 and MiaPaCa-2 cells. (G) Scatterplot of codon use changes in differentially translated genes (down vs. all other and down vs. up) in METTL1-KO versus control cells. Valine codons are highlighted in magenta. (H) Comparison of m7G-valine codon usage between TE-down genes versus all other genes. ***P < 0.001, by Wilcoxon rank-sum test. (I–L) Comparison of individual valine codon usage between TE-down genes versus all other genes. (I) GTA. (J) GTT. (K) GTG. (L) GTC. ***P < 0.001, by Wilcoxon rank-sum test. Data are representative of 3 independent experiments. All data are presented as the mean ± SD.

Copyright © 2026 American Society for Clinical Investigation
ISSN: 0021-9738 (print), 1558-8238 (online)

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