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TET repression and increased DNMT activity synergistically induce aberrant DNA methylation
Hideyuki Takeshima, Tohru Niwa, Satoshi Yamashita, Takeji Takamura-Enya, Naoko Iida, Mika Wakabayashi, Sohachi Nanjo, Masanobu Abe, Toshiro Sugiyama, Young-Joon Kim, Toshikazu Ushijima
Hideyuki Takeshima, Tohru Niwa, Satoshi Yamashita, Takeji Takamura-Enya, Naoko Iida, Mika Wakabayashi, Sohachi Nanjo, Masanobu Abe, Toshiro Sugiyama, Young-Joon Kim, Toshikazu Ushijima
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Research Article Oncology

TET repression and increased DNMT activity synergistically induce aberrant DNA methylation

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Abstract

Chronic inflammation is deeply involved in various human disorders, such as cancer, neurodegenerative disorders, and metabolic disorders. Induction of epigenetic alterations, especially aberrant DNA methylation, is one of the major mechanisms, but how it is induced is still unclear. Here, we found that expression of TET genes, methylation erasers, was downregulated in inflamed mouse and human tissues, and that this was caused by upregulation of TET-targeting miRNAs such as MIR20A, MIR26B, and MIR29C, likely due to activation of NF-κB signaling downstream of IL-1β and TNF-α. However, TET knockdown induced only mild aberrant methylation. Nitric oxide (NO), produced by NOS2, enhanced enzymatic activity of DNA methyltransferases (DNMTs), methylation writers, and NO exposure induced minimal aberrant methylation. In contrast, a combination of TET knockdown and NO exposure synergistically induced aberrant methylation, involving genomic regions not methylated by either alone. The results showed that a vicious combination of TET repression, due to NF-κB activation, and DNMT activation, due to NO production, is responsible for aberrant methylation induction in human tissues.

Authors

Hideyuki Takeshima, Tohru Niwa, Satoshi Yamashita, Takeji Takamura-Enya, Naoko Iida, Mika Wakabayashi, Sohachi Nanjo, Masanobu Abe, Toshiro Sugiyama, Young-Joon Kim, Toshikazu Ushijima

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Figure 5

Biological relevance of methylation induction by the combination of TET repression and NOC18 treatment.

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Biological relevance of methylation induction by the combination of TET ...
(A) Synergistic effect of a combination of TET3 knockdown (KD) and NOC18 treatment confirmed in a gastric cancer cell line, HSC60. Compared with TET3 knockdown alone or NOC18 treatment alone, their combination strongly induced aberrant DNA methylation in the HSC60 cells in a culture period–dependent manner. Genomic blocks with Δβ value ≥ 0.2 are in triangles with a red broken line, and their numbers are noted. (B) Characteristics of genomic regions aberrantly methylated by the combination. Most of the hypermethylated genomic blocks were located in gene body regions without CpG islands. (C) Biological relevance of genomic regions aberrantly methylated by the combination. Genes methylated by the combination in HSC60 were also methylated in primary noncancerous tissues of gastric cancer patients. (D) A model of induction of aberrant DNA methylation by chronic inflammation. In biological settings, chronic inflammation can induce both TET repression and increased DNMT activity. This vicious combination was considered to cooperatively induce aberrant DNA methylation, even in genomic regions resistant to DNA methylation induction.

Copyright © 2026 American Society for Clinical Investigation
ISSN: 0021-9738 (print), 1558-8238 (online)

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