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Super-enhancers maintain renin-expressing cell identity and memory to preserve multi-system homeostasis
Maria Florencia Martinez, Silvia Medrano, Robin Isadora Brown, Turan Tufan, Stephen Shang, Nadia Bertoncello, Omar Guessoum, Mazhar Adli, Brian C. Belyea, Maria Luisa S. Sequeira-Lopez, R. Ariel Gomez
Maria Florencia Martinez, Silvia Medrano, Robin Isadora Brown, Turan Tufan, Stephen Shang, Nadia Bertoncello, Omar Guessoum, Mazhar Adli, Brian C. Belyea, Maria Luisa S. Sequeira-Lopez, R. Ariel Gomez
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Research Article Endocrinology Nephrology

Super-enhancers maintain renin-expressing cell identity and memory to preserve multi-system homeostasis

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Abstract

Renin cells are crucial for survival — they control fluid-electrolyte and blood pressure homeostasis, vascular development, regeneration, and oxygen delivery to tissues. During embryonic development, renin cells are progenitors for multiple cell types that retain the memory of the renin phenotype. When there is a threat to survival, those descendants are transformed and reenact the renin phenotype to restore homeostasis. We tested the hypothesis that the molecular memory of the renin phenotype resides in unique regions and states of these cells’ chromatin. Using renin cells at various stages of stimulation, we identified regions in the genome where the chromatin is open for transcription, mapped histone modifications characteristic of active enhancers such as H3K27ac, and tracked deposition of transcriptional activators such as Med1, whose deletion results in ablation of renin expression and low blood pressure. Using the rank ordering of super-enhancers, epigenetic rewriting, and enhancer deletion analysis, we found that renin cells harbor a unique set of super-enhancers that determine their identity. The most prominent renin super-enhancer may act as a chromatin sensor of signals that convey the physiologic status of the organism, and is responsible for the transformation of renin cell descendants to the renin phenotype, a fundamental process to ensure homeostasis.

Authors

Maria Florencia Martinez, Silvia Medrano, Robin Isadora Brown, Turan Tufan, Stephen Shang, Nadia Bertoncello, Omar Guessoum, Mazhar Adli, Brian C. Belyea, Maria Luisa S. Sequeira-Lopez, R. Ariel Gomez

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Figure 4

A super-enhancer at the renin locus contributes to renin cell identity.

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A super-enhancer at the renin locus contributes to renin cell identity.
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(A) The renin super-enhancer is indicated by the grey bar at the top of the figure. The y axis shows the scales used for the signal enrichment for each assay. The x axis shows the coordinates across the genome. The ATAC-Seq profile shows overlap of the signals among the JG cells (green), recruited cells (blue), and As4.1 cells (pink) upstream of the coding region of the renin gene. Recruited cells and As4.1 cells share a similar distribution of H3K27ac signals. Also shown are the ChIP-Seq signals corresponding to MED1 (dark blue) and Pol II (purple). Pol II shows a strong signal all along the renin gene, suggesting that the gene is actively transcribed. All the ChIP-Seq signals overlapped with the accessible chromatin shown for the JG cells and recruited native renin cells. (B) The classic enhancer (CE, 241 bp) is located between –2866 to –2625 (light blue circle). It contains a bona fide CRE element where Creb binds. The purple circle marks the Rbpj-Enh. (C) Targeted deletion of the CE and the Rbpj-Enh using the CRISPR-Cas9 system. Shown are the genomic sequences of the targeted areas with the PAM sequences indicated in red and the Sanger sequencing chromatograms confirming the deletions. (D) Renin mRNA expression levels were significantly decreased in the targeted populations of cells in comparison with control samples for both the CE and the Rbpj-Enh. (E) Measurement of renin protein in the supernatants of targeted populations after 48 hours of transfection shows a significant decrease in secreted renin levels. These data indicate that these regions within the renin SE are involved in the regulation of renin synthesis and release. Data are represented as mean ± SD (n = 3 in each group). **P < 0.01, ***P < 0.001, by unpaired, 2-sided Student’s t test.

Copyright © 2026 American Society for Clinical Investigation
ISSN: 0021-9738 (print), 1558-8238 (online)

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