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Super-enhancers maintain renin-expressing cell identity and memory to preserve multi-system homeostasis
Maria Florencia Martinez, Silvia Medrano, Robin Isadora Brown, Turan Tufan, Stephen Shang, Nadia Bertoncello, Omar Guessoum, Mazhar Adli, Brian C. Belyea, Maria Luisa S. Sequeira-Lopez, R. Ariel Gomez
Maria Florencia Martinez, Silvia Medrano, Robin Isadora Brown, Turan Tufan, Stephen Shang, Nadia Bertoncello, Omar Guessoum, Mazhar Adli, Brian C. Belyea, Maria Luisa S. Sequeira-Lopez, R. Ariel Gomez
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Research Article Endocrinology Nephrology

Super-enhancers maintain renin-expressing cell identity and memory to preserve multi-system homeostasis

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Abstract

Renin cells are crucial for survival — they control fluid-electrolyte and blood pressure homeostasis, vascular development, regeneration, and oxygen delivery to tissues. During embryonic development, renin cells are progenitors for multiple cell types that retain the memory of the renin phenotype. When there is a threat to survival, those descendants are transformed and reenact the renin phenotype to restore homeostasis. We tested the hypothesis that the molecular memory of the renin phenotype resides in unique regions and states of these cells’ chromatin. Using renin cells at various stages of stimulation, we identified regions in the genome where the chromatin is open for transcription, mapped histone modifications characteristic of active enhancers such as H3K27ac, and tracked deposition of transcriptional activators such as Med1, whose deletion results in ablation of renin expression and low blood pressure. Using the rank ordering of super-enhancers, epigenetic rewriting, and enhancer deletion analysis, we found that renin cells harbor a unique set of super-enhancers that determine their identity. The most prominent renin super-enhancer may act as a chromatin sensor of signals that convey the physiologic status of the organism, and is responsible for the transformation of renin cell descendants to the renin phenotype, a fundamental process to ensure homeostasis.

Authors

Maria Florencia Martinez, Silvia Medrano, Robin Isadora Brown, Turan Tufan, Stephen Shang, Nadia Bertoncello, Omar Guessoum, Mazhar Adli, Brian C. Belyea, Maria Luisa S. Sequeira-Lopez, R. Ariel Gomez

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Figure 3

The renin cells possess a unique set of super-enhancers that differentiate them from other cell types.

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The renin cells possess a unique set of super-enhancers that differentia...
(A) There were 211 super-enhancers identified in native recruited cells, with the renin gene exhibiting the highest enrichment of H3K27ac signal, according to the ROSE software. (B) Pie chart illustrating the percentage of super-enhancers identified by H3K27ac ChIP-Seq. (C and D) Super-enhancer regions are larger in length and had more cumulative enrichment of H3K27ac signal than typical enhancers. (E) Super-enhancer–associated genes (blue) have higher expression levels than enhancer-associated genes (green). The histogram shows the density (number of counts in a bin, y axis) of genes as a function of the expression range in a logarithm scale (x axis). The dashed lines show the mean for each group. (F) Ninety-one super-enhancers, including the renin super-enhancer, are shared by the renin cells and absent in the other 21 tissue types. (G) Genome browser image showing deposition of H3K27ac signal upstream of the coding region of the renin gene only in renin cells. (H) GO terms significantly enriched using the genes associated with the 91 super-enhancers in renin cells. The GO terms exhibited a fold enrichment greater than 2 and a P < 0.05. (I) Left. Genes involved in Notch signaling (striped circles) and predicted associations returned by GeneMANIA. Right. Gene network illustrating predicted associations between genes involved in the cAMP signaling pathway as determined by GeneMANIA. Highlighted are genes related to the regulation of systemic blood pressure. Each gene is represented by a node (circles). The node size is proportional to the degree of connectivity and the node colors represent the functions in which genes are involved. Lines represent the relationship between genes, and the line width is proportional to the confidence of the connection. Wilcoxon signed rank sum test was performed for C, D, and E, P < 0.0001.

Copyright © 2026 American Society for Clinical Investigation
ISSN: 0021-9738 (print), 1558-8238 (online)

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