Instability in the composition of gut bacterial communities (dysbiosis) has been linked to common human intestinal disorders, such as Crohn’s disease and colorectal cancer. Here, we show that dysbiosis caused by
Aurélie Couturier-Maillard, Thomas Secher, Ateequr Rehman, Sylvain Normand, Adèle De Arcangelis, Robert Haesler, Ludovic Huot, Teddy Grandjean, Aude Bressenot, Anne Delanoye-Crespin, Olivier Gaillot, Stefan Schreiber, Yves Lemoine, Bernhard Ryffel, David Hot, Gabriel Nùñez, Grace Chen, Philip Rosenstiel, Mathias Chamaillard
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Pre-Administration of Berberine Exerts Chemopreventive Effects in AOM/DSS-Induced Colitis-Associated Carcinogenesis Mice via Modulating Inflammation and Intestinal Microbiota
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Investigating dysbiosis and microbial treatment strategies in inflammatory bowel disease based on two modified Koch’s postulates
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Gut | 2021 |
RIPK2 as a New Therapeutic Target in Inflammatory Bowel Diseases
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Multi-Omics Analysis of Gut Microbiota in Inflammatory Bowel Diseases: What Benefits for Diagnostic, Prognostic and Therapeutic Tools?
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Receptors Mediating Host-Microbiota Communication in the Metaorganism: The Invertebrate Perspective
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Gut Microbiota Contributes to Spontaneous Colitis in E3 Ligase Itch-Deficient Mice
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Journal of immunology (Baltimore, Md. : 1950) | 2020 |
Gut Microbiota in Acute Ischemic Stroke: From Pathophysiology to Therapeutic Implications
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Frontiers in neurology | 2020 |
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Nod2 protects mice from inflammation and obesity-dependent liver cancer
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Scientific Reports | 2020 |
DJ-1 (Park7) affects the gut microbiome, metabolites and the development of innate lymphoid cells (ILCs)
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NOD2 Influences Trajectories of Intestinal Microbiota Recovery After Antibiotic Perturbation
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BMC Cancer | 2020 |
The Hidden Effect of Nod2 in the Host/Microbiota Relationship
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CMGH Cellular and Molecular Gastroenterology and Hepatology | 2020 |
Association of oral dysbiosis with oral cancer development (Review)
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Oncology Letters | 2020 |
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Mucosal Immunology | 2019 |
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BATF2 prevents T-cell-mediated intestinal inflammation through regulation of the IL-23/IL-17 pathway
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Alteration of Gut Microbiota in Inflammatory Bowel Disease (IBD): Cause or Consequence? IBD Treatment Targeting the Gut Microbiome
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Pathogens | 2019 |
The NLRP3 inflammasome mediates DSS-induced intestinal inflammation in Nod2 knockout mice
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Innate immunity | 2019 |
Genetic Factors and the Intestinal Microbiome Guide Development of Microbe-Based Therapies for Inflammatory Bowel Diseases
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How the gut microbiome regulates host immune responses to viral vaccines
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npj Precision Oncology | 2019 |
1,25(OH)2D3 deficiency-induced gut microbial dysbiosis degrades the colonic mucus barrier in Cyp27b1 knockout mouse model
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Gut pathogens | 2019 |
Gut microbiota dependent anti-tumor immunity restricts melanoma growth in Rnf5−/− mice
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Nature Communications | 2019 |
Genetic effects on the commensal microbiota in inflammatory bowel disease patients
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PLoS genetics | 2019 |
Gut Microbiota Differs Between Parkinson’s Disease Patients and Healthy Controls in Northeast China
C Li, L Cui, Y Yang, J Miao, X Zhao, J Zhang, G Cui, Y Zhang |
Frontiers in molecular neuroscience | 2019 |
Longitudinal microbiome profiling reveals impermanence of probiotic bacteria in domestic pigeons
K Grond, JM Perreau, WT Loo, AJ Spring, CM Cavanaugh, SM Hird, JJ Loor |
PloS one | 2019 |
Differential Expression Profile of NLRs and AIM2 in Glioma and Implications for NLRP12 in Glioblastoma
N Sharma, S Saxena, I Agrawal, S Singh, V Srinivasan, S Arvind, S Epari, S Paul, S Jha |
Scientific Reports | 2019 |
Diet-induced remission in chronic enteropathy is associated with altered microbial community structure and synthesis of secondary bile acids
S Wang, R Martins, MC Sullivan, ES Friedman, AM Misic, A El-Fahmawi, EC Martinis, K OBrien, Y Chen, C Bradley, G Zhang, AS Berry, CA Hunter, RN Baldassano, MP Rondeau, DP Beiting |
Microbiome | 2019 |
Microbial genes and pathways in inflammatory bowel disease
M Schirmer, A Garner, H Vlamakis, RJ Xavier |
Nature Reviews Microbiology | 2019 |
FAM96A Protects Mice From Dextran Sulfate Sodium (DSS)-Induced Colitis by Preventing Microbial Dysbiosis
A Yin, Y Luo, W Chen, M He, JH Deng, N Zhao, L Cao, L Wang |
Frontiers in Cellular and Infection Microbiology | 2019 |
Targeting innate sensing in the tumor microenvironment to improve immunotherapy
Z Liu, C Han, YX Fu |
Cellular and Molecular Immunology | 2019 |
The Gut Microbiome in Inflammatory Bowel Diseases: Diagnostic and Therapeutic Implications
K Aden, W Reindl |
Viszeralmedizin | 2019 |
Alternative & complementary treatment for pediatric inflammatory bowel disease
R Magen, R Shaoul |
Translational Pediatrics | 2019 |
Systematic meta-analyses, field synopsis and global assessment of the evidence of genetic association studies in colorectal cancer
Z Montazeri, X Li, C Nyiraneza, X Ma, M Timofeeva, V Svinti, X Meng, Y He, Y Bo, S Morgan, S Castellví-Bel, C Ruiz-Ponte, C Fernández-Rozadilla, Á Carracedo, A Castells, T Bishop, D Buchanan, MA Jenkins, TO Keku, A Lindblom, FJ van Duijnhoven, A Wu, SM Farrington, MG Dunlop, H Campbell, E Theodoratou, W Zheng, J Little |
Gut | 2019 |
Fecal Microbial Transplantation for Diseases Beyond Recurrent Clostridium Difficile Infection
GR DHaens, C Jobin |
Gastroenterology | 2019 |
Reproductive Senescence and Ischemic Stroke Remodel the Gut Microbiome and Modulate the Effects of Estrogen Treatment in Female Rats
M Park, R Pilla, A Panta, S Pandey, B Sarawichitr, J Suchodolski, F Sohrabji |
Translational Stroke Research | 2019 |
Nod2 influences microbial resilience and susceptibility to colitis following antibiotic exposure.
Goethel A, Turpin W, Rouquier S, Zanello G, Robertson SJ, Streutker CJ, Philpott DJ, Croitoru K |
Mucosal Immunology | 2019 |
The microbiome and autoimmunity: a paradigm from the gut–liver axis
B Li, C Selmi, R Tang, ME Gershwin, X Ma |
Cellular and Molecular Immunology | 2018 |
The interplay between microbes and the immune response in inflammatory bowel disease: Interplay between NOD2, microbiota and immune response in IBD
A Goethel, K Croitoru, DJ Philpott |
The Journal of Physiology | 2018 |
Communication Between the Microbiota and Mammalian Immunity
KS Ost, JL Round |
Annual Review of Microbiology | 2018 |
The Microbiological Memory, an Epigenetic Regulator Governing the Balance Between Good Health and Metabolic Disorders
CA Devaux, D Raoult |
Frontiers in microbiology | 2018 |
Microbial dysbiosis associated with impaired intestinal Na+/H+ exchange accelerates and exacerbates colitis in ex-germ free mice
CA Harrison, D Laubitz, CL Ohland, MT Midura-Kiela, K Patil, DG Besselsen, DR Jamwal, C Jobin, FK Ghishan, PR Kiela |
Mucosal Immunology | 2018 |
Microbiota, Epithelium, Inflammation, and TGF-β Signaling: An Intricate Interaction in Oncogenesis
X Pang, Y Tang, X Ren, Q Chen, Y Tang, X Liang |
Frontiers in microbiology | 2018 |
Microbiota in cancer development and treatment
MH Raza, K Gul, A Arshad, N Riaz, U Waheed, A Rauf, F Aldakheel, S Alduraywish, MU Rehman, M Abdullah, M Arshad |
Journal of Cancer Research and Clinical Oncology | 2018 |
Carcinogenesis as a Result of Multiple Inflammatory and Oxidative Hits: a Comprehensive Review from Tumor Microenvironment to Gut Microbiota
F Morgillo, M Dallio, CM Corte, AG Gravina, G Viscardi, C Loguercio, F Ciardiello, A Federico |
Neoplasia (New York, N.Y.) | 2018 |
Role of the NLRP3 inflammasome in cancer
M Moossavi, N Parsamanesh, A Bahrami, SL Atkin, A Sahebkar |
Molecular Cancer | 2018 |
NOD2 Expression in Intestinal Epithelial Cells Protects Toward the Development of Inflammation and Associated Carcinogenesis
A Ferrand, ZA Nabhani, NS Tapias, E Mas, JP Hugot, F Barreau |
CMGH Cellular and Molecular Gastroenterology and Hepatology | 2018 |
Nucleotide-Binding Domain Leucine-Rich Repeat Containing Proteins and Intestinal Microbiota: Pivotal Players in Colitis and Colitis-Associated Cancer Development
A Prossomariti, H Sokol, L Ricciardiello |
Frontiers in immunology | 2018 |
Microbiota dysbiosis and barrier dysfunction in inflammatory bowel disease and colorectal cancers: exploring a common ground hypothesis
LC Yu |
Journal of Biomedical Science | 2018 |
Impact of microbiota in colorectal carcinogenesis: lessons from experimental models
LC Yu, SC Wei, YH Ni |
Intestinal Research | 2018 |
B Cell Defects Observed in Nod2 Knockout Mice Are a Consequence of a Dock2 Mutation Frequently Found in Inbred Strains
SY Wong, M Coffre, D Ramanan, MJ Hines, LE Gomez, LA Peters, EE Schadt, SB Koralov, K Cadwell |
Journal of immunology (Baltimore, Md. : 1950) | 2018 |
Human Gut Microbiota and Gastrointestinal Cancer
C Meng, C Bai, TD Brown, LE Hood, Q Tian |
Genomics, proteomics & bioinformatics / Beijing Genomics Institute | 2018 |
Significance of Streptococcus gallolyticus subsp. gallolyticus Association With Colorectal Cancer
E Pasquereau-Kotula, M Martins, L Aymeric, S Dramsi |
Frontiers in microbiology | 2018 |
Breast Cancer and Its Relationship with the Microbiota
M Fernández, I Reina-Pérez, J Astorga, A Rodríguez-Carrillo, J Plaza-Díaz, L Fontana |
International journal of environmental research and public health | 2018 |
Antitumor Activity of Extract From the Sporoderm-Breaking Spore of Ganoderma lucidum: Restoration on Exhausted Cytotoxic T Cell With Gut Microbiota Remodeling
J Su, L Su, D Li, O Shuai, Y Zhang, H Liang, C Jiao, Z Xu, Y Lai, Y Xie |
Frontiers in immunology | 2018 |
The New Frontier: the Intestinal Microbiome and Surgery
KB Skowron, BD Shogan, DT Rubin, NH Hyman |
Journal of Gastrointestinal Surgery | 2018 |
The Role of the Gut Microbiome in Colorectal Cancer
G Chen |
Clinics in colon and rectal surgery | 2018 |
Caspase recruitment domain (CARD) family (CARD9, CARD10, CARD11, CARD14 and CARD15) are increased during active inflammation in patients with inflammatory bowel disease
JK Yamamoto-Furusho, G Fonseca-Camarillo, J Furuzawa-Carballeda, A Sarmiento-Aguilar, R Barreto-Zuñiga, B Martínez-Benitez, MA Lara-Velazquez |
Journal of Inflammation | 2018 |
Colorectal cancer mutational profiles correlate with defined microbial communities in the tumor microenvironment
MB Burns, E Montassier, J Abrahante, S Priya, DE Niccum, A Khoruts, TK Starr, D Knights, R Blekhman, ER Fearon |
PLoS genetics | 2018 |
The Artificial Sweetener Splenda Promotes Gut Proteobacteria, Dysbiosis, and Myeloperoxidase Reactivity in Crohn’s Disease–Like Ileitis
A Rodriguez-Palacios, A Harding, P Menghini, C Himmelman, M Retuerto, KP Nickerson, M Lam, CM Croniger, MH McLean, SK Durum, TT Pizarro, MA Ghannoum, S Ilic, C McDonald, F Cominelli |
Inflammatory Bowel Diseases | 2018 |
NOD2 and inflammation: current insights
A Negroni, M Pierdomenico, S Cucchiara, L Stronati |
Journal of inflammation research | 2018 |
Functional Genomics of Host–Microbiome Interactions in Humans
F Luca, SS Kupfer, D Knights, A Khoruts, R Blekhman |
Trends in genetics : TIG | 2018 |
Grow With the Challenge – Microbial Effects on Epithelial Proliferation, Carcinogenesis, and Cancer Therapy
J von Frieling, C Fink, J Hamm, K Klischies, M Forster, TC Bosch, T Roeder, P Rosenstiel, F Sommer |
Frontiers in microbiology | 2018 |
Nod2 Deficiency in mice is Associated with Microbiota Variation Favouring the Expansion of mucosal CD4+ LAP+ Regulatory Cells
A Butera, MD Paola, L Pavarini, F Strati, M Pindo, M Sanchez, D Cavalieri, M Boirivant, CD Filippo |
Scientific Reports | 2018 |
Proteasomal degradation of NOD2 by NLRP12 in monocytes promotes bacterial tolerance and colonization by enteropathogens
S Normand, N Waldschmitt, A Neerincx, RJ Martinez-Torres, C Chauvin, A Couturier-Maillard, O Boulard, L Cobret, F Awad, L Huot, A Ribeiro-Ribeiro, K Lautz, R Ruez, M Delacre, C Bondu, M Guilliams, C Scott, A Segal, S Amselem, D Hot, S Karabina, E Bohn, B Ryffel, LF Poulin, TA Kufer, M Chamaillard |
Nature Communications | 2018 |
Harnessing the untapped potential of nucleotide‐binding oligomerization domain ligands for cancer immunotherapy
S Nabergoj, I MlinaričRaščan, Ž Jakopin |
Medicinal Research Reviews | 2018 |
Defective ATG16L1-mediated removal of IRE1α drives Crohn’s disease–like ileitis
M Tschurtschenthaler, TE Adolph, JW Ashcroft, L Niederreiter, R Bharti, S Saveljeva, J Bhattacharyya, MB Flak, DQ Shih, GM Fuhler, M Parkes, K Kohno, T Iwawaki, CJ van der Woude, HP Harding, AM Smith, MP Peppelenbosch, SR Targan, D Ron, P Rosenstiel, RS Blumberg, A Kaser |
Journal of Experimental Medicine | 2017 |
Interactions between Intestinal Microbiota and Host Immune Response in Inflammatory Bowel Disease
M Zhang, K Sun, Y Wu, Y Yang, P Tso, Z Wu |
Frontiers in immunology | 2017 |
Nod2 and Nod2-regulated microbiota protect BALB/c mice from diet-induced obesity and metabolic dysfunction
I Rodriguez-Nunez, T Caluag, K Kirby, CN Rudick, R Dziarski, D Gupta |
Scientific Reports | 2017 |
NLRP6 Protects Il10 −/− Mice from Colitis by Limiting Colonization of Akkermansia muciniphila
SS Seregin, N Golovchenko, B Schaf, J Chen, NA Pudlo, J Mitchell, NT Baxter, L Zhao, PD Schloss, EC Martens, KA Eaton, GY Chen |
Cell Reports | 2017 |
MiR-22 sustains NLRP3 expression and attenuates H. pylori-induced gastric carcinogenesis
S Li, X Liang, L Ma, L Shen, T Li, L Zheng, A Sun, W Shang, C Chen, W Zhao, J Jia |
Oncogene | 2017 |
NOD2 Suppresses Colorectal Tumorigenesis via Downregulation of the TLR Pathways
SM Udden, L Peng, JL Gan, JM Shelton, JS Malter, LV Hooper, H Zaki |
Cell Reports | 2017 |
Dysbiosis and the immune system
M Levy, AA Kolodziejczyk, CA Thaiss, E Elinav |
Nature Reviews Immunology | 2017 |
Nod2: The intestinal gate keeper
ZA Nabhani, G Dietrich, JP Hugot, F Barreau, JB Bliska |
PLoS pathogens | 2017 |
Human genetic variation and the gut microbiome in disease
AB Hall, AC Tolonen, RJ Xavier |
Nature Reviews Genetics | 2017 |
NLRP12 attenuates colon inflammation by maintaining colonic microbial diversity and promoting protective commensal bacterial growth
L Chen, JE Wilson, MJ Koenigsknecht, WC Chou, SA Montgomery, AD Truax, WJ Brickey, CD Packey, N Maharshak, GK Matsushima, SE Plevy, VB Young, RB Sartor, JP Ting |
Nature Immunology | 2017 |
The influence of the commensal microbiota on distal tumor-promoting inflammation
CM Rosean, MR Rutkowski |
Seminars in Immunology | 2017 |
Intestinal microbiota, fecal microbiota transplantation, and inflammatory bowel disease
AR Weingarden, BP Vaughn |
Gut microbes | 2017 |
Can you cause inflammatory bowel disease with fecal transplantation? A 31-patient case-series of fecal transplantation using stool from a donor who later developed Crohn's disease
M Fischer, M Bittar, E Papa, Z Kassam, M Smith |
Gut microbes | 2017 |
Interleukin-22 drives nitric oxide-dependent DNA damage and dysplasia in a murine model of colitis-associated cancer
C Wang, G Gong, A Sheh, S Muthupalani, EM Bryant, DA Puglisi, H Holcombe, EA Conaway, NA Parry, V Bakthavatchalu, SP Short, CS Williams, GN Wogan, SR Tannenbaum, JG Fox, BH Horwitz |
Mucosal Immunology | 2017 |
Insights into the role of the intestinal microbiota in colon cancer
S Oke, A Martin |
Therapeutic advances in gastroenterology | 2017 |
The Impact of Gut Microbiota on Gender-Specific Differences in Immunity
F Fransen, AA van Beek, T Borghuis, B Meijer, F Hugenholtz, CG der Jongh, HF Savelkoul, MI de Jonge, MM Faas, MV Boekschoten, H Smidt, SE Aidy, P Vos |
Frontiers in immunology | 2017 |
Structures of the inactive and active states of RIP2 kinase inform on the mechanism of activation
E Pellegrini, L Signor, S Singh, EB Erba, S Cusack, P Lewis |
PloS one | 2017 |
Reduction of Abeta amyloid pathology in APPPS1 transgenic mice in the absence of gut microbiota
T Harach, N Marungruang, N Duthilleul, V Cheatham, KD Coy, G Frisoni, JJ Neher, F Fåk, M Jucker, T Lasser, T Bolmont |
Scientific Reports | 2017 |
Gut flora profiling and fecal metabolite composition of colorectal cancer patients and healthy individuals
X Wang, J Wang, B Rao, L Deng |
Experimental and therapeutic medicine | 2017 |
The association between environmental exposures during childhood and the subsequent development of Crohn’s disease: A score analysis approach
VT Sabe, AR Basson, E Jordaan, M Mazinu, AV Grishin |
PloS one | 2017 |
Host-Microbiota Interactions Shape Local and Systemic Inflammatory Diseases
JB Grigg, GF Sonnenberg |
Journal of immunology (Baltimore, Md. : 1950) | 2017 |
Vitamin D Axis in Inflammatory Bowel Diseases: Role, Current Uses and Future Perspectives
RD Pinto, C Ferri, F Cominelli |
International journal of molecular sciences | 2017 |
Distinct Microbial Communities Trigger Colitis Development upon Intestinal Barrier Damage via Innate or Adaptive Immune Cells
U Roy, EJ Gálvez, A Iljazovic, TR Lesker, AJ Błażejewski, MC Pils, U Heise, S Huber, RA Flavell, T Strowig |
Cell Reports | 2017 |
The role of intestinal bacteria in the development and progression of gastrointestinal tract neoplasms
K Mima, S Ogino, S Nakagawa, H Sawayama, K Kinoshita, R Krashima, T Ishimoto, K Imai, M Iwatsuki, D Hashimoto, Y Baba, Y Sakamoto, Y Yamashita, N Yoshida, A Chikamoto, T Ishiko, H Baba |
Surgical Oncology | 2017 |
NOD2 maybe a biomarker for the survival of kidney cancer patients
D Xu, S Zhang, S Zhang, H Liu, P Li, L Yu, H Shang, Y Hou, Y Tian |
Oncotarget | 2017 |
Microbiota and reproducibility of rodent models
CL Franklin, AC Ericsson |
Lab Animal | 2017 |
Environmental triggers in IBD: a review of progress and evidence
AN Ananthakrishnan, CN Bernstein, D Iliopoulos, A Macpherson, MF Neurath, RA Ali, SR Vavricka, C Fiocchi |
Nature Reviews Gastroenterology & Hepatology | 2017 |
The resilience of the intestinal microbiota influences health and disease
F Sommer, JM Anderson, R Bharti, J Raes, P Rosenstiel |
Nature Reviews Microbiology | 2017 |
Toll-like receptor-mediated immune responses in intestinal macrophages; implications for mucosal immunity and autoimmune diseases
Z Zhou, M Ding, L Huang, G Gilkeson, R Lang, W Jiang |
Clinical Immunology | 2016 |
Sporadic colorectal cancer: microbial contributors to disease prevention, development and therapy
JL Drewes, F Housseau, CL Sears |
British Journal of Cancer | 2016 |
The intestinal microbiome and surgical disease
MA Krezalek, KB Skowron, KL Guyton, B Shakhsheer, S Hyoju, JC Alverdy |
Current Problems in Surgery | 2016 |
Different Th17 immunity in gut, liver, and adipose tissues during obesity: the role of diet, genetics, and microbes
JF Cavallari, E Denou, KP Foley, WI Khan, JD Schertzer |
Gut microbes | 2016 |
Role of the microbiome in non-gastrointestinal cancers
M Pevsner-Fischer, T Tuganbaev, M Meijer, SH Zhang, ZR Zeng, MH Chen, E Elinav |
World journal of clinical oncology | 2016 |
Gut microbiota imbalance and colorectal cancer
J Gagnière |
World journal of gastroenterology : WJG | 2016 |
Nod1 Limits Colitis-Associated Tumorigenesis by Regulating IFN- Production
Y Zhan, SS Seregin, J Chen, GY Chen |
Journal of immunology (Baltimore, Md. : 1950) | 2016 |
Genetic and Metabolic Signals during Acute Enteric Bacterial Infection Alter the Microbiota and Drive Progression to Chronic Inflammatory Disease
K Kamdar, S Khakpour, J Chen, V Leone, J Brulc, T Mangatu, DA Antonopoulos, EB Chang, SA Kahn, BS Kirschner, G Young, RW DePaolo |
Cell Host & Microbe | 2016 |
Bacterial Muramyl Dipeptide (MDP) Restricts Human Cytomegalovirus Replication via an IFN-β-Dependent Pathway
A Kapoor, YH Fan, R Arav-Boger |
Scientific Reports | 2016 |
Triterpenoid herbal saponins enhance beneficial bacteria, decrease sulfate-reducing bacteria, modulate inflammatory intestinal microenvironment and exert cancer preventive effects in ApcMin/+ mice
L Chen, MS Brar, FC Leung, WL Hsiao |
Oncotarget | 2016 |
Paneth cell α-defensins and enteric microbiota in health and disease
K NAKAMURA, N SAKURAGI, A TAKAKUWA, T AYABE |
Bioscience of Microbiota, Food and Health | 2016 |
Normalizing Microbiota-Induced Retinoic Acid Deficiency Stimulates Protective CD8+ T Cell-Mediated Immunity in Colorectal Cancer
N Bhattacharya, R Yuan, TR Prestwood, HL Penny, MA DiMaio, NE Reticker-Flynn, CR Krois, JA Kenkel, TD Pham, Y Carmi, L Tolentino, O Choi, R Hulett, J Wang, DA Winer, JL Napoli, EG Engleman |
Immunity | 2016 |
The commensal microbiota exacerbate infectious colitis in stressor-exposed mice
JD Galley, NM Parry, BM Ahmer, JG Fox, MT Bailey |
Brain, Behavior, and Immunity | 2016 |
Nod2: A Critical Regulator of Ileal Microbiota and Crohn’s Disease
T Sidiq, S Yoshihama, I Downs, KS Kobayashi |
Frontiers in immunology | 2016 |
The Role of the Microbiome in Gastrointestinal Cancer
LE Wroblewski, RM Peek, LA Coburn |
Gastroenterology Clinics of North America | 2016 |
A Pleiotropic Missense Variant in SLC39A8 Is Associated With Crohn’s Disease and Human Gut Microbiome Composition
D Li, JP Achkar, T Haritunians, JP Jacobs, KY Hui, M D'Amato, S Brand, G Radford-Smith, J Halfvarson, JH Niess, S Kugathasan, C Büning, LP Schumm, L Klei, A Ananthakrishnan, G Aumais, L Baidoo, M Dubinsky, C Fiocchi, J Glas, R Milgrom, DD Proctor, M Regueiro, LA Simms, JM Stempak, SR Targan, L Törkvist, Y Sharma, B Devlin, J Borneman, H Hakonarson, RJ Xavier, M Daly, SR Brant, JD Rioux, MS Silverberg, JH Cho, J Braun, DP McGovern, RH Duerr |
Gastroenterology | 2016 |
Hydradenitis suppurativa and inflammatory bowel disease: An unusual, but existing association
M Principi, N Cassano, A Contaldo, A Iannone, G Losurdo, M Barone, M Mastrolonardo, GA Vena, E Ierardi, AD Leo |
World journal of gastroenterology : WJG | 2016 |
Pathogenic role of the gut microbiota in gastrointestinal diseases
H Nagao-Kitamoto, S Kitamoto, P Kuffa, N Kamada |
Intestinal Research | 2016 |
NOD2 mutations and colorectal cancer - Where do we stand?
D Branquinho, P Freire, C Sofia |
World journal of gastrointestinal surgery | 2016 |
Inflammatory bowel disease, colorectal cancer and type 2 diabetes mellitus: The links
A Jurjus, A Eid, SA Kattar, MN Zeenny, A Gerges-Geagea, H Haydar, A Hilal, D Oueidat, M Matar, J Tawilah, IH Hussein, P Schembri-Wismayer, F Cappello, G Tomasello, A Leone, RA Jurjus |
BBA Clinical | 2016 |
Intestinal Epithelial Toll-Like Receptor 4 Signaling Affects Epithelial Function and Colonic Microbiota and Promotes a Risk for Transmissible Colitis
R Dheer, R Santaolalla, JM Davies, JK Lang, MC Phillips, C Pastorini, MT Vazquez-Pertejo, MT Abreu, VB Young |
Infection and immunity | 2016 |
Pglyrp-Regulated Gut Microflora Prevotella falsenii, Parabacteroides distasonis and Bacteroides eggerthii Enhance and Alistipes finegoldii Attenuates Colitis in Mice
R Dziarski, SY Park, DR Kashyap, SE Dowd, D Gupta, E Mizoguchi |
PloS one | 2016 |
Microbiota as a mediator of cancer progression and therapy
JL Pope, S Tomkovich, Y Yang, C Jobin |
Translational Research | 2016 |
Host-Microbiome Interaction and Cancer: Potential Application in Precision Medicine
AV Contreras, B Cocom-Chan, G Hernandez-Montes, T Portillo-Bobadilla, O Resendis-Antonio |
Frontiers in physiology | 2016 |
Classic IL-6R signalling is dispensable for intestinal epithelial proliferation and repair
K Aden, A Breuer, A Rehman, H Geese, F Tran, J Sommer, GH Waetzig, TM Reinheimer, S Schreiber, S Rose-John, J Scheller, P Rosenstiel |
Oncogenesis | 2016 |
Genetic deletion of the bacterial sensor NOD2 improves murine Crohn’s disease-like ileitis independent of functional dysbiosis
D Corridoni, A Rodriguez-Palacios, GD Stefano, LD Martino, DA Antonopoulos, EB Chang, KO Arseneau, TT Pizarro, F Cominelli |
Mucosal Immunology | 2016 |
The common mouse protozoa Tritrichomonas muris alters mucosal T cell homeostasis and colitis susceptibility
NK Escalante, P Lemire, MC Tleugabulova, D Prescott, A Mortha, CJ Streutker, SE Girardin, DJ Philpott, T Mallevaey |
Journal of Experimental Medicine | 2016 |
Role of the Microbiota in Colorectal Cancer: Updates on Microbial Associations and Therapeutic Implications
OI Coleman, T Nunes |
BioResearch Open Access | 2016 |
Fungal microbiota dysbiosis in IBD
H Sokol, V Leducq, H Aschard, HP Pham, S Jegou, C Landman, D Cohen, G Liguori, A Bourrier, I Nion-Larmurier, J Cosnes, P Seksik, P Langella, D Skurnik, ML Richard, L Beaugerie |
Gut | 2016 |
Uncoupling of mucosal gene regulation, mRNA splicing and adherent microbiota signatures in inflammatory bowel disease
R Häsler, R Sheibani-Tezerji, A Sinha, M Barann, A Rehman, D Esser, K Aden, C Knecht, B Brandt, S Nikolaus, S Schäuble, C Kaleta, A Franke, C Fretter, W Müller, MT Hütt, M Krawczak, S Schreiber, P Rosenstiel |
Gut | 2016 |
The microbiome and innate immunity
CA Thaiss, N Zmora, M Levy, E Elinav |
Nature | 2016 |
Autophagy protects against colitis by the maintenance of normal gut microflora and mucus secretion
K Tsuboi, M Nishitani, A Takakura, Y Imai, M Komatsu, H Kawashima |
The Journal of biological chemistry | 2015 |
Intestinal barrier loss as a critical pathogenic link between inflammatory bowel disease and graft-versus-host disease
SC Nalle, JR Turner |
Mucosal Immunology | 2015 |
Defective NOD2 peptidoglycan sensing promotes diet-induced inflammation, dysbiosis, and insulin resistance
E Denou, K Lolmede, L Garidou, C Pomie, C Chabo, TC Lau, MD Fullerton, G Nigro, A Zakaroff-Girard, E Luche, C Garret, M Serino, J Amar, M Courtney, JF Cavallari, BD Henriksbo, NG Barra, KP Foley, JB McPhee, BM Duggan, HM O'Neill, AJ Lee, P Sansonetti, AA Ashkar, WI Khan, MG Surette, A Bouloumie, GR Steinberg, R Burcelin, JD Schertzer |
EMBO Molecular Medicine | 2015 |
Mechanisms of Microbe–Host Interaction in Crohn’s Disease: Dysbiosis vs. Pathobiont Selection
LF Buttó, M Schaubeck, D Haller |
Frontiers in immunology | 2015 |
Microbiota-Mediated Inflammation and Antimicrobial Defense in the Intestine
S Caballero, EG Pamer |
Annual Review of Immunology | 2015 |
NLR-regulated pathways in cancer: opportunities and obstacles for therapeutic interventions
N Sharma, S Jha |
Cellular and Molecular Life Sciences | 2015 |
Mechanisms of Immune Signaling in Colitis-Associated Cancer
MJ Waldner, MF Neurath |
CMGH Cellular and Molecular Gastroenterology and Hepatology | 2015 |
Group 3 innate lymphoid cells: regulating host–commensal bacteria interactions in inflammation and cancer
J Goc, MR Hepworth, GF Sonnenberg |
International Immunology | 2015 |
Cancer and the microbiota
WS Garrett |
Science | 2015 |
Roles of Commensal Microbiota in Pancreas Homeostasis and Pancreatic Pathologies
C Leal-Lopes, FJ Velloso, JC Campopiano, MC Sogayar, RG Correa |
Journal of Diabetes Research | 2015 |
Ranking the impact of human health disorders on gut metabolism: Systemic lupus erythematosus and obesity as study cases
D Rojo, A Hevia, R Bargiela, P López, A Cuervo, S González, A Suárez, B Sánchez, M Martínez-Martínez, C Milani, M Ventura, C Barbas, A Moya, A Suárez, A Margolles, M Ferrer |
Scientific Reports | 2015 |
Diet Dominates Host Genotype in Shaping the Murine Gut Microbiota
RN Carmody, GK Gerber, JM Luevano, DM Gatti, L Somes, KL Svenson, PJ Turnbaugh |
Cell Host & Microbe | 2015 |
Why Is Initial Bacterial Colonization of the Intestine Important to Infantsʼ and Childrenʼs Health?:
PD Houghteling, WA Walker |
Journal of Pediatric Gastroenterology and Nutrition | 2015 |
Bifidobacterium longum CCM 7952 Promotes Epithelial Barrier Function and Prevents Acute DSS-Induced Colitis in Strictly Strain-Specific Manner
D Srutkova, M Schwarzer, T Hudcovic, Z Zakostelska, V Drab, A Spanova, B Rittich, H Kozakova, I Schabussova, M Chamaillard |
PloS one | 2015 |
The Influence of the Autoimmunity-Associated Ancestral HLA Haplotype AH8.1 on the Human Gut Microbiota: A Cross-Sectional Study
JR Hov, H Zhong, B Qin, JA Anmarkrud, K Holm, A Franke, BA Lie, TH Karlsen, BA Wilson |
PloS one | 2015 |
A host-microbiome interaction mediates the opposing effects of omega-6 and omega-3 fatty acids on metabolic endotoxemia
K Kaliannan, B Wang, XY Li, KJ Kim, JX Kang |
Scientific Reports | 2015 |
Manipulating the Gut Microbiota: Methods and Challenges: Figure 1
AC Ericsson, CL Franklin |
ILAR journal / National Research Council, Institute of Laboratory Animal Resources | 2015 |
Maternal Antibiotic Treatment Protects Offspring from Diabetes Development in Nonobese Diabetic Mice by Generation of Tolerogenic APCs
Y Hu, J Peng, N Tai, C Hu, X Zhang, FS Wong, L Wen |
Journal of immunology (Baltimore, Md. : 1950) | 2015 |
Inflammatory Signaling by NOD-RIPK2 Is Inhibited by Clinically Relevant Type II Kinase Inhibitors
P Canning, Q Ruan, T Schwerd, M Hrdinka, JL Maki, D Saleh, C Suebsuwong, S Ray, PE Brennan, GD Cuny, HH Uhlig, M Gyrd-Hansen, A Degterev, AN Bullock |
Chemistry & Biology | 2015 |
The Microbiome and Cancer: Is the ‘Oncobiome’ Mirage Real?
RM Thomas, C Jobin |
Trends in Cancer | 2015 |
N-3 Polyunsaturated Fatty Acids (PUFAs) Reverse the Impact of Early-Life Stress on the Gut Microbiota
MM Pusceddu, SE Aidy, F Crispie, O OSullivan, P Cotter, C Stanton, P Kelly, JF Cryan, TG Dinan, J Homberg |
PloS one | 2015 |
From Birth to “Immunohealth,” Allergies and Enterocolitis:
PD Houghteling, WA Walker |
Journal of Clinical Gastroenterology | 2015 |
Dysbiotic gut microbiota causes transmissible Crohn's disease-like ileitis independent of failure in antimicrobial defence
M Schaubeck, T Clavel, J Calasan, I Lagkouvardos, SB Haange, N Jehmlich, M Basic, A Dupont, M Hornef, M Bergen, A Bleich, D Haller |
Gut | 2015 |
Fecal microbiota transplantation: in perspective
S Gupta, E Allen-Vercoe, EO Petrof |
Therapeutic advances in gastroenterology | 2015 |
Pathological and therapeutic interactions between bacteriophages, microbes and the host in inflammatory bowel disease
J Babickova |
World journal of gastroenterology : WJG | 2015 |
Gut mucosal microbiome across stages of colorectal carcinogenesis
G Nakatsu, X Li, H Zhou, J Sheng, SH Wong, WK Wu, SC Ng, H Tsoi, Y Dong, N Zhang, Y He, Q Kang, L Cao, K Wang, J Zhang, Q Liang, J Yu, JJ Sung |
Nature Communications | 2015 |
Immune–microbiota interactions in health and disease
NW Palm, MR de Zoete, RA Flavell |
Clinical Immunology | 2015 |
Microbiota-Modulated Metabolites Shape the Intestinal Microenvironment by Regulating NLRP6 Inflammasome Signaling
M Levy, CA Thaiss, D Zeevi, L Dohnalová, G Zilberman-Schapira, JA Mahdi, E David, A Savidor, T Korem, Y Herzig, M Pevsner-Fischer, H Shapiro, A Christ, A Harmelin, Z Halpern, E Latz, RA Flavell, I Amit, E Segal, E Elinav |
Cell | 2015 |
The intestinal microbiota: its role in health and disease
L Biedermann, G Rogler |
European Journal of Pediatrics | 2015 |
Fusobacterium nucleatum, inflammation, and immunity: the fire within human gut
A Bashir, AY Miskeen, YM Hazari, S Asrafuzzaman, KM Fazili |
Tumor Biology | 2015 |
The Microbial Basis of Inflammatory Bowel Diseases
Sushila Dalal, Eugene B. Chang |
Journal of Clinical Investigation | 2014 |
Diet-Induced Alterations in Gut Microflora Contribute to Lethal Pulmonary Damage in TLR2/TLR4-Deficient Mice
Y Ji, S Sun, JK Goodrich, H Kim, AC Poole, GE Duhamel, RE Ley, L Qi |
Cell Reports | 2014 |
PTPN2 controls differentiation of CD4+ T cells and limits intestinal inflammation and intestinal dysbiosis
MR Spalinger, S Kasper, C Chassard, T Raselli, I Frey-Wagner, C Gottier, S Lang, K Atrott, SR Vavricka, F Mair, B Becher, C Lacroix, M Fried, G Rogler, M Scharl |
Mucosal Immunology | 2014 |
Gastrointestinal Malignancy and the Microbiome
MT Abreu, RM Peek |
Gastroenterology | 2014 |
NOD-Like Receptors in Intestinal Homeostasis and Epithelial Tissue Repair
M Parlato, G Yeretssian |
International journal of molecular sciences | 2014 |
Diet, gut microbes, and genetics in immune function: can we leverage our current knowledge to achieve better outcomes in inflammatory bowel diseases?
VA Leone, CM Cham, EB Chang |
Current Opinion in Immunology | 2014 |
Feasibility of Applying Helper-Dependent Adenoviral Vectors for Cancer Immunotherapy
L Farzad, M Suzuki |
Biomedicines | 2014 |
Nod/Ripk2 signaling in dendritic cells activates IL-17A-secreting innate lymphoid cells and drives colitis in T-bet-/-.Rag2-/- (TRUC) mice
J Ermann, T Staton, JN Glickman, RW Malefyt, LH Glimcher |
Proceedings of the National Academy of Sciences | 2014 |
Immune and genetic gardening of the intestinal microbiome
JP Jacobs, J Braun |
FEBS Letters | 2014 |
Bacterial Sensor Nod2 Prevents Inflammation of the Small Intestine by Restricting the Expansion of the Commensal Bacteroides vulgatus
D Ramanan, MS Tang, R Bowcutt, P Loke, K Cadwell |
Immunity | 2014 |
Intestinal epithelial vitamin D receptor deletion leads to defective autophagy in colitis
S Wu, Y Zhang, R Lu, Y Xia, D Zhou, EO Petrof, EC Claud, D Chen, EB Chang, G Carmeliet, J Sun |
Gut | 2014 |
Understanding Host-Adherent-Invasive Escherichia coli Interaction in Crohn’s Disease: Opening Up New Therapeutic Strategies
A Agus, S Massier, A Darfeuille-Michaud, E Billard, N Barnich |
BioMed Research International | 2014 |
Mechanisms and pathways of innate immune activation and regulation in health and cancer
J Cui, Y Chen, HY Wang, RF Wang |
Human Vaccines & Immunotherapeutics | 2014 |
NOD-Like Receptors: Master Regulators of Inflammation and Cancer
M Saxena, G Yeretssian |
Frontiers in immunology | 2014 |
Peptidoglycan Recognition Protein 3 and Nod2 Synergistically Protect Mice from Dextran Sodium Sulfate-Induced Colitis
X Jing, F Zulfiqar, SY Park, G Nunez, R Dziarski, D Gupta |
Journal of immunology (Baltimore, Md. : 1950) | 2014 |
Nucleotide-Binding Oligomerization Domain-Containing Protein 2 Controls Host Response to Campylobacter jejuni in Il10-/- Mice
X Sun, C Jobin |
The Journal of Infectious Diseases | 2014 |
NOD1 and NOD2: Signaling, Host Defense, and Inflammatory Disease
R Caruso, N Warner, N Inohara, G Núñez |
Immunity | 2014 |
Critical design aspects involved in the study of Paneth cells and the intestinal microbiota
MT Shanahan, IM Carroll, AS Gulati |
Gut microbes | 2014 |
Role of Rip2 in development of tumor-infiltrating MDSCs and bladder cancer metastasis
H Zhang, AI Chin |
PloS one | 2014 |
The gut microbiota in mouse models of inflammatory bowel disease
KK Gkouskou, C Deligianni, C Tsatsanis, AG Eliopoulos |
Frontiers in Cellular and Infection Microbiology | 2014 |
Gut microbiome and anticancer immune response: really hot Sh*t!
S Viaud, R Daillère, IG Boneca, P Lepage, P Langella, M Chamaillard, MJ Pittet, F Ghiringhelli, G Trinchieri, R Goldszmid, L Zitvogel |
Cell Death and Differentiation | 2014 |
Exposure to a social stressor disrupts the community structure of the colonic mucosa-associated microbiota
JD Galley, MC Nelson, Z Yu, SE Dowd, J Walter, PS Kumar, M Lyte, MT Bailey |
BMC Microbiology | 2014 |
Cancer-Promoting Effects of Microbial Dysbiosis
AM Sheflin, AK Whitney, TL Weir |
Current Oncology Reports | 2014 |
The Genetic Predisposition and the Interplay of Host Genetics and Gut Microbiome in Crohn Disease
H Jianzhong |
Clinics in Laboratory Medicine | 2014 |
Complex host genetics influence the microbiome in inflammatory bowel disease
D Knights, MS Silverberg, RK Weersma, D Gevers, G Dijkstra, H Huang, AD Tyler, S Sommeren, F Imhann, JM Stempak, H Huang, P Vangay, GA Al-Ghalith, C Russell, J Sauk, J Knight, MJ Daly, C Huttenhower, RJ Xavier |
Genome Medicine | 2014 |
Intestinal microbiota: The explosive mixture at the origin of inflammatory bowel disease?
R Bringiotti |
World journal of gastrointestinal pathophysiology | 2014 |
Reactive Oxygen Species Regulate Caspase-11 Expression and Activation of the Non-canonical NLRP3 Inflammasome during Enteric Pathogen Infection
CR Lupfer, PK Anand, Z Liu, KL Stokes, P Vogel, M Lamkanfi, TD Kanneganti, DM Monack |
PLoS pathogens | 2014 |
Microbial genomic analysis reveals the essential role of inflammation in bacteria-induced colorectal cancer
JC Arthur, RZ Gharaibeh, M Mühlbauer, E Perez-Chanona, JM Uronis, J McCafferty, AA Fodor, C Jobin |
Nature Communications | 2014 |
Role of Nlrp6 and Nlrp12 in the maintenance of intestinal homeostasis: HIGHLIGHTS
GY Chen |
European Journal of Immunology | 2014 |
Recent Advancement in Understanding Colitis-associated Tumorigenesis:
D Low, M Mino-Kenudson, E Mizoguchi |
Inflammatory Bowel Diseases | 2014 |
The Microbiota Protects against Ischemia/Reperfusion-Induced Intestinal Injury through Nucleotide-Binding Oligomerization Domain-Containing Protein 2 (NOD2) Signaling
E Perez-Chanona, M Mühlbauer, C Jobin |
The American Journal of Pathology | 2014 |
From promotion to management: The wide impact of bacteria on cancer and its treatment: Prospects & Overviews
E Perez-Chanona, C Jobin |
BioEssays | 2014 |
Association among genetic predisposition, gut microbiota, and host immune response in the etiopathogenesis of inflammatory bowel disease
Basso PJ, Fonseca MT, Bonfá G, Alves VB, Sales-Campos H, Nardini V, Cardoso CR |
Brazilian Journal of Medical and Biological Research | 2014 |
Role of the gut microbiota in immunity and inflammatory disease
N Kamada, SU Seo, GY Chen, G Núñez |
Nature Reviews Immunology | 2013 |
The role of pattern recognition receptors in intestinal inflammation
M Fukata, M Arditi |
Mucosal Immunology | 2013 |
AIEC pathobiont instigates chronic colitis in susceptible hosts by altering microbiota composition
B Chassaing, O Koren, FA Carvalho, RE Ley, AT Gewirtz |
Gut | 2013 |
Nod1 and Nod2 signaling does not alter the composition of intestinal bacterial communities at homeostasis
SJ Robertson, JY Zhou, K Geddes, SJ Rubino, JH Cho, SE Girardin, DJ Philpott |
Gut microbes | 2013 |
The microbiome and cancer
RF Schwabe, C Jobin |
Nature Reviews Cancer | 2013 |
Impact of the gut microbiome on mucosal inflammation
W Strober |
Trends in Immunology | 2013 |
The Yin and Yang of Toll-like receptors in cancer
JP Pradere, DH Dapito, RF Schwabe |
Oncogene | 2013 |
The Gut Microbiome Modulates Colon Tumorigenesis
JP Zackular, NT Baxter, KD Iverson, WD Sadler, JF Petrosino, GY Chen, PD Schloss |
mBio | 2013 |
Inflammation-induced cancer: crosstalk between tumours, immune cells and microorganisms
E Elinav, R Nowarski, CA Thaiss, B Hu, C Jin, RA Flavell |
Nature Reviews Cancer | 2013 |
NLRP6 in infection and inflammation
PK Anand, TD Kanneganti |
Microbes and infection / Institut Pasteur | 2013 |
Gut Microbiota Protects against Gastrointestinal Tumorigenesis Caused by Epithelial Injury
Y Zhan, PJ Chen, WD Sadler, F Wang, S Poe, G Nunez, KA Eaton, GY Chen |
Cancer research | 2013 |
Debug Your Bugs - How NLRs Shape Intestinal Host-Microbe Interactions
S Lipinski, P Rosenstiel |
Frontiers in immunology | 2013 |
NOD proteins: regulators of inflammation in health and disease
DJ Philpott, MT Sorbara, SJ Robertson, K Croitoru, SE Girardin |
Nature Reviews Immunology | 2013 |
Animal models of ulcerative colitis and their application in drug research
D Low, DD Nguyen, E Mizoguchi |
Drug design, development and therapy | 2013 |
Nod2 activates NF-kB in CD4+ T cells but its expression is dispensable for T cell-induced colitis
G Zanello, A Goethel, K Forster, K Geddes, DJ Philpott, K Croitoru |
PloS one | 2013 |
Colorectal cancer: looking for answers in the microbiota
C Jobin |
Cancer Discovery | 2013 |
NOD2 prevents emergence of disease-predisposing microbiota
T Secher, S Normand, M Chamaillard |
Gut microbes | 2013 |
The microbiome and colorectal neoplasia: environmental modifiers of dysbiosis
ND Turner, LE Ritchie, RS Bresalier, RS Chapkin |
Current Gastroenterology Reports | 2013 |
The Gdac1 locus modifies spontaneous and Salmonella-induced colitis in mice deficient in either Gpx2 or Gpx1 gene
RS Esworthy, BW Kim, Y Wang, Q Gao, JH Doroshow, TL Leto, FF Chu |
Free radical biology & medicine | 2013 |
Microbiota impact on the epigenetic regulation of colorectal cancer
T Yang, JL Owen, YL Lightfoot, MP Kladde, M Mohamadzadeh |
Trends in Molecular Medicine | 2013 |
Advances in inflammatory bowel disease pathogenesis: linking host genetics and the microbiome
D Knights, KG Lassen, RJ Xavier |
Gut | 2013 |
RIP2 activity in inflammatory disease and implications for novel therapeutics
JC Jun, F Cominelli, DW Abbott |
Journal of leukocyte biology | 2013 |
ATG16L1 Crohn's disease risk stresses the endoplasmic reticulum of Paneth cells
A Kaser, RS Blumberg |
Gut | 2013 |
Nod2 deficiency is associated with an increased mucosal immunoregulatory response to commensal microorganisms
A Amendola, A Butera, M Sanchez, W Strober, M Boirivant |
Mucosal Immunology | 2013 |