Gene transfer into HSCs is an effective treatment for SCID, although potentially limited by the risk of insertional mutagenesis. We performed a genome-wide analysis of retroviral vector integrations in genetically corrected HSCs and their multilineage progeny before and up to 47 months after transplantation into 5 patients with adenosine deaminase–deficient SCID. Gene-dense regions, promoters, and transcriptionally active genes were preferred retroviral integrations sites (RISs) both in preinfusion transduced CD34+ cells and in vivo after gene therapy. The occurrence of insertion sites proximal to protooncogenes or genes controlling cell growth and self renewal, including LMO2, was not associated with clonal selection or expansion in vivo. Clonal analysis of long-term repopulating cell progeny in vivo revealed highly polyclonal T cell populations and shared RISs among multiple lineages, demonstrating the engraftment of multipotent HSCs. These data have important implications for the biology of retroviral vectors, the dynamics of genetically modified HSCs, and the safety of gene therapy.
Alessandro Aiuti, Barbara Cassani, Grazia Andolfi, Massimiliano Mirolo, Luca Biasco, Alessandra Recchia, Fabrizia Urbinati, Cristina Valacca, Samantha Scaramuzza, Memet Aker, Shimon Slavin, Matteo Cazzola, Daniela Sartori, Alessandro Ambrosi, Clelia Di Serio, Maria Grazia Roncarolo, Fulvio Mavilio, Claudio Bordignon
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Molecular Therapy — Oncolytics | 2019 |
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Frontiers in Pediatrics | 2019 |
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Genome Medicine | 2018 |
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Journal of Clinical Investigation | 2017 |
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AJ Thrasher, DA Williams |
Molecular Therapy | 2017 |
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Journal of Clinical Immunology | 2017 |
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Journal of Allergy and Clinical Immunology | 2017 |
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Molecular Therapy - Nucleic Acids | 2017 |
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Virus Genes | 2017 |
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EMBO Molecular Medicine | 2017 |
Interactions Between Retroviruses and the Host Cell genome
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Molecular Therapy - Methods & Clinical Development | 2017 |
Update on the safety and efficacy of retroviral gene therapy for immunodeficiency due to adenosine deaminase deficiency
MP Cicalese, F Ferrua, L Castagnaro, R Pajno, F Barzaghi, S Giannelli, F Dionisio, I Brigida, M Bonopane, M Casiraghi, A Tabucchi, F Carlucci, E Grunebaum, M Adeli, RG Bredius, JM Puck, P Stepensky, I Tezcan, K Rolfe, ED Boever, RR Reinhardt, J Appleby, F Ciceri, MG Roncarolo, A Aiuti |
Blood | 2016 |
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International Journal of Hematology | 2016 |
In Vivo Tracking of Human Hematopoiesis Reveals Patterns of Clonal Dynamics during Early and Steady-State Reconstitution Phases
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Cell Stem Cell | 2016 |
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CY Kuo, DB Kohn |
Current Allergy and Asthma Reports | 2016 |
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Molecular Therapy — Methods & Clinical Development | 2016 |
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JE Vargas, L Chicaybam, RT Stein, A Tanuri, A Delgado-Cañedo, MH Bonamino |
Journal of Translational Medicine | 2016 |
Thymic expression of a T-cell receptor targeting a tumor-associated antigen coexpressed in the thymus induces T-ALL
Y Cui, M Onozawa, HR Garber, L Samsel, Z Wang, JP McCoy, S Burkett, X Wu, PD Aplan, CL Mackall |
Blood | 2015 |
Genomic discovery of potent chromatin insulators for human gene therapy
M Liu, MT Maurano, H Wang, H Qi, CZ Song, PA Navas, DW Emery, JA Stamatoyannopoulos, G Stamatoyannopoulos |
Nature Biotechnology | 2015 |
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BMC bioinformatics | 2015 |
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Human Gene Therapy Methods | 2015 |
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Human Gene Therapy | 2015 |
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Human Gene Therapy | 2014 |
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Genome Medicine | 2014 |
Lentiviral Hematopoietic Stem Cell Gene Therapy in Inherited Metabolic Disorders
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Human Gene Therapy | 2014 |
Concise Review: Lessons Learned From Clinical Trials of Gene Therapy in Monogenic Immunodeficiency Diseases
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Stem Cells Translational Medicine | 2014 |
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Drugs | 2014 |
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AR Riegman, R Yadak, Y Helsdingen, H Boer, NP van Til, G Wagemaker |
Human Gene Therapy | 2014 |
Integration Site and Clonal Expansion in Human Chronic Retroviral Infection and Gene Therapy
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Viruses | 2014 |
Genomic Analysis of Sleeping Beauty Transposon Integration in Human Somatic Cells
G Turchiano, MC Latella, A Gogol-Döring, C Cattoglio, F Mavilio, Z Izsvák, Z Ivics, A Recchia, SD Fugmann |
PloS one | 2014 |
Preclinical Demonstration of Lentiviral Vector-mediated Correction of Immunological and Metabolic Abnormalities in Models of Adenosine Deaminase Deficiency
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Molecular Therapy | 2013 |
Evaluating risks of insertional mutagenesis by DNA transposons in gene therapy
PB Hackett, DA Largaespada, KC Switzer, LJ Cooper |
Translational Research | 2013 |
Long-Term Follow-up of Foamy Viral Vector-Mediated Gene Therapy for Canine Leukocyte Adhesion Deficiency
TR Bauer, LM Tuschong, KR Calvo, HR Shive, TH Burkholder, EK Karlsson, RR West, DW Russell, DD Hickstein |
Molecular Therapy | 2013 |
Gene therapy on the move
KB Kaufmann, H Büning, A Galy, A Schambach, M Grez |
EMBO Molecular Medicine | 2013 |
Influence of untranslated regions on retroviral mRNA transfer and expression
A Prel, L Sensébé, JC Pagès |
BMC Biotechnology | 2013 |
Gene therapy for PIDs: Progress, pitfalls and prospects
S Mukherjee, AJ Thrasher |
Gene | 2013 |
Autoimmune dysregulation and purine metabolism in adenosine deaminase deficiency
AV Sauer, I Brigida, N Carriglio, A Aiuti |
Frontiers in immunology | 2012 |
In vivo selection of autologous MGMT gene-modified cells following reduced-intensity conditioning with BCNU and temozolomide in the dog model
JL Gori, BC Beard, C Ironside, G Karponi, HP Kiem |
Cancer Gene Therapy | 2012 |
Development of Gene Therapy for Thalassemia
AW Nienhuis, DA Persons |
Cold Spring Harbor Perspectives in Medicine | 2012 |
Retroviral Integrations in Gene Therapy Trials
L Biasco, C Baricordi, A Aiuti |
Molecular Therapy | 2012 |
Gene Therapy for Primary Immunodeficiencies
C Rivat, G Santilli, HB Gaspar, AJ Thrasher |
Human Gene Therapy | 2012 |
High efficiency restriction enzyme-free linear amplification-mediated polymerase chain reaction approach for tracking lentiviral integration sites does not abrogate retrieval bias
C Wu, A Jares, T Winkler, J Xie, JY Metais, CE Dunbar |
Human Gene Therapy | 2012 |
Integration profile of retroviral vector in gene therapy treated patients is cell-specific according to gene expression and chromatin conformation of target cell
L Biasco, A Ambrosi, D Pellin, C Bartholomae, I Brigida, MG Roncarolo, CD Serio, C Kalle, M Schmidt, A Aiuti |
EMBO Molecular Medicine | 2011 |
Hematopoietic stem cell engineering at a crossroads
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Blood | 2011 |
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Nature Reviews Genetics | 2011 |
Distribution of Lentiviral Vector Integration Sites in Mice Following Therapeutic Gene Transfer to Treat β-thalassemia
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Molecular Therapy | 2011 |
Recombinant Adeno-Associated Virus-Mediated Gene Transfer for the Potential Therapy of Adenosine Deaminase-Deficient Severe Combined Immune Deficiency
JN Silver, Melissa, T Conlon, P Cruz, AJ Wright, A Srivastava, TR Flotte |
Human Gene Therapy | 2011 |
A method to sequence and quantify DNA integration for monitoring outcome in gene therapy
T Brady, SL Roth, N Malani, GP Wang, CC Berry, P Leboulch, S Hacein-Bey-Abina, M Cavazzana-Calvo, EP Papapetrou, M Sadelain, H Savilahti, FD Bushman |
Nucleic Acids Research | 2011 |
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MA Kay |
Nature Reviews Genetics | 2011 |
Insertion Sites in Engrafted Cells Cluster Within a Limited Repertoire of Genomic Areas After Gammaretroviral Vector Gene Therapy
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Molecular Therapy | 2011 |
Estimated Comparative Integration Hotspots Identify Different Behaviors of Retroviral Gene Transfer Vectors
A Ambrosi, IK Glad, D Pellin, C Cattoglio, F Mavilio, CD Serio, A Frigessi |
PLoS computational biology | 2011 |
Tracking of Specific Integrant Clones in Dogs Treated with Foamy Virus Vectors
K Ohmine, Y Li, TR Bauer, DD Hickstein, DW Russell |
Human Gene Therapy | 2011 |
Genotoxicity of retroviral hematopoietic stem cell gene therapy
GD Trobridge |
Expert Opinion on Biological Therapy | 2011 |
Solving the Problem of γ-Retroviral Vectors Containing Long Terminal Repeats
DA Persons, C Baum |
Molecular Therapy | 2011 |
Safe harbours for the integration of new DNA in the human genome
M Sadelain, EP Papapetrou, FD Bushman |
Nature Reviews Cancer | 2011 |
Stem cell gene therapy: the risks of insertional mutagenesis and approaches to minimize genotoxicity
C Wu, CE Dunbar |
Frontiers of Medicine | 2011 |
Gammaretroviral Vectors: Biology, Technology and Application
T Maetzig, M Galla, C Baum, A Schambach |
Viruses | 2011 |
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MM Hsieh, CD Fitzhugh, JF Tisdale |
Blood | 2011 |
A Transposon and Transposase System for Human Application
PB Hackett, DA Largaespada, LJ Cooper |
Molecular Therapy | 2010 |
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Blood | 2010 |
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Nature Biotechnology | 2010 |
Assessing the Risk of T-cell Malignancies in Mouse Models of SCID-X1
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Molecular Therapy | 2010 |
High-definition mapping of retroviral integration sites defines the fate of allogeneic T cells after donor lymphocyte infusion
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PloS one | 2010 |
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Nature Protocols | 2010 |
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Gene Therapy | 2010 |
Gene Therapy of Chronic Granulomatous Disease: The Engraftment Dilemma
M Grez, J Reichenbach, J Schwäble, R Seger, MC Dinauer, AJ Thrasher |
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Journal of Clinical Investigation | 2009 |
Preventing and exploiting the oncogenic potential of integrating gene vectors
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Journal of Clinical Investigation | 2009 |
How I treat ADA deficiency
HB Gaspar, A Aiuti, F Porta, F Candotti, MS Hershfield, LD Notarangelo |
Blood | 2009 |
Cell-intrinsic and Vector-related Properties Cooperate to Determine the Incidence and Consequences of Insertional Mutagenesis
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Molecular Therapy | 2009 |
Retroviral vector integration in post-transplant hematopoiesis in mice conditioned with either submyeloablative or ablative irradiation
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Gene Therapy | 2009 |
Transcriptional Enhancers Induce Insertional Gene Deregulation Independently From the Vector Type and Design
G Maruggi, S Porcellini, G Facchini, SK Perna, C Cattoglio, D Sartori, A Ambrosi, A Schambach, C Baum, C Bonini, C Bovolenta, F Mavilio, A Recchia |
Molecular Therapy | 2009 |
Comprehensive genomic access to vector integration in clinical gene therapy
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Nature Medicine | 2009 |
Transcription factor binding sites are genetic determinants of retroviral integration in the human genome
B Felice, C Cattoglio, D Cittaro, A Testa, A Miccio, G Ferrari, L Luzi, A Recchia, F Mavilio |
PloS one | 2009 |
Long-term vector integration site analysis following retroviral mediated gene transfer to hematopoietic stem cells for the treatment of HIV infection
J Hayakawa, K Washington, N Uchida, O Phang, EM Kang, MM Hsieh, JF Tisdale |
PloS one | 2009 |
Genome Areas with High Gene Density and CpG Island Neighborhood Strongly Attract Porcine Endogenous Retrovirus for Integration and Favor the Formation of Hot Spots
Y Moalic, H Félix, Y Takeuchi, A Jestin, Y Blanchard |
Journal of virology | 2009 |
Identification of a high incidence region for retroviral vector integration near exon 1 of the LMO2locus
K Yamada, T Tsukahara, K Yoshino, K Kojima, H Agawa, Y Yamashita, Y Amano, M Hatta, Y Matsuzaki, N Kurotori, K Wakui, Y Fukushima, R Osada, T Shiozawa, K Sakashita, K Koike, S Kumaki, N Tanaka, T Takeshita |
Retrovirology | 2009 |
Hematopoietic stem cell gene therapy for adenosine deaminase deficient-SCID
A Aiuti, I Brigida, F Ferrua, B Cappelli, R Chiesa, S Marktel, MG Roncarolo |
Immunologic Research | 2009 |
Integration target site selection by a resurrected human endogenous retrovirus
T Brady, YN Lee, K Ronen, N Malani, CC Berry, PD Bieniasz, FD Bushman |
Genes & development | 2009 |
Development of gene therapy: potential in severe combined immunodeficiency due to adenosine deaminase deficiency.
Montiel-Equihua CA, Thrasher AJ, Gaspar HB |
Stem cells and cloning : advances and applications | 2009 |
High Incidence of Leukemia after Stem-Cell Gene Therapy in Large Animals with a HOXB4-expressing Vector
Xiao-Bing Zhang, Brian C. Beard, Grant D. Trobridge, Brent L. Wood, George E. Sale, Reeteka Sud, R. Keith Humphries, Hans-Peter Kiem |
Journal of Clinical Investigation | 2008 |
Insertional Oncogenesis in Four Patients after Retrovirus-Mediated Gene Therapy of SCID-X1
Salima Hacein-Bey-Abina 1,2, Alexandrine Garrigue 2, Garry.P Wang 3, Jean Soulier 4, Annick Lim 5, Estelle Morillon 2, Emmanuelle Clappier 5, Laure Caccavelli 1, Eric Delabesse 6, Kheira Beldjord 7,8, Vahid Asnafi 7,8, Elizabeth MacIntyre7,8, Isabelle Radford 8, Nicole Brousse 9, François Sigaux4, Despina Moshous10, Julia Hauer 2, Arndt Borkhardt 11, Bernd.H Belohradsky 12, Uwe Wintergerst 12, Maria.C Velez 13, Lily Leiva13, Ricardo Sorensen 13, Nicolas Wulffraat 14, Stéphane Blanche 10, Frederic.D Bushman 3, Alain Fischer *2,10, Marina Cavazzana-Calvo *1,2 |
Journal of Clinical Investigation | 2008 |
Altered intracellular and extracellular signaling leads to impaired T-cell functions in ADA-SCID patients
B Cassani, M Mirolo, F Cattaneo, U Benninghoff, M Hershfield, F Carlucci, A Tabucchi, C Bordignon, MG Roncarolo, A Aiuti |
Blood | 2008 |
Stem Cell Marking With Promotor-deprived Self-inactivating Retroviral Vectors Does Not Lead to Induced Clonal Imbalance
K Cornils, C Lange, A Schambach, MH Brugman, R Nowak, M Lioznov, C Baum, B Fehse |
Molecular Therapy | 2008 |
Neonatal intravenous injection of a gammaretroviral vector has a low incidence of tumor induction in mice
M Tittiger, X Ma, L Xu, KP Ponder |
Human Gene Therapy | 2008 |
Recent advances in gene therapy for severe congenital immunodeficiency diseases
R Sokolic, C Kesserwan, F Candotti |
Current Opinion in Hematology | 2008 |
Integration site selection by retroviral vectors: molecular mechanism and clinical consequences
R Daniel, JA Smith |
Human Gene Therapy | 2008 |
Retroviral integration process in the human genome: is it really non-random? A new statistical approach
A Ambrosi, C Cattoglio, CD Serio |
PLoS computational biology | 2008 |
DNA bar coding and pyrosequencing to analyze adverse events in therapeutic gene transfer
GP Wang, A Garrigue, A Ciuffi, K Ronen, J Leipzig, C Berry, C Lagresle-Peyrou, F Benjelloun, S Hacein-Bey-Abina, A Fischer, M Cavazzana-Calvo, FD Bushman |
Nucleic Acids Research | 2008 |
Genetic modification of somatic stem cells
F Mavilio, G Ferrari |
EMBO reports | 2008 |
Retroviral integration and human gene therapy
Frederic D. Bushman |
Journal of Clinical Investigation | 2007 |