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B cell deficiency induces cytotoxic memory CD8+ T cells during influenza-associated bacterial pneumonia
Leigh M. Miller, Alexis M. Duray, Ellyse M. Cipolla, Flavia Rago, Brooke P. Dresden, Kristen L. Parenteau, Abhigya Gupta, John F. Alcorn
Leigh M. Miller, Alexis M. Duray, Ellyse M. Cipolla, Flavia Rago, Brooke P. Dresden, Kristen L. Parenteau, Abhigya Gupta, John F. Alcorn
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Research Article Immunology Infectious disease

B cell deficiency induces cytotoxic memory CD8+ T cells during influenza-associated bacterial pneumonia

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Abstract

Influenza-associated bacterial superinfections in the lung lead to increased morbidity and mortality. Nearly all people have preexisting memory to influenza virus, which can protect against subsequent infection in the lung. This study explored the role B cells play in protection against bacterial (Staphylococcus aureus or Klebsiella pneumoniae) superinfection with previous heterotypic influenza memory. B cell deficiency resulted in an increased inflammatory lung environment and lung tissue injury during superinfection. Loss of B cells increased populations of memory CD8+ T cells in the lung, and these CD8+ T cells were transcriptionally and functionally distinct from those of WT mice. Use of antibody-deficient mouse models showed that this phenotype was specifically due to loss of antibody production from B cells. Passive immunization with influenza antibody serum in B cell–deficient mice rescued the CD8+ T cell phenotype. CD8+ T cell depletion and lethal superinfection challenge experiments showed that the cytotoxic memory CD8+ T cells from B cell–deficient mice protect against superinfection bacterial burden and mortality. These findings provide insight into the importance of B cells for regulating immune responses against infection.

Authors

Leigh M. Miller, Alexis M. Duray, Ellyse M. Cipolla, Flavia Rago, Brooke P. Dresden, Kristen L. Parenteau, Abhigya Gupta, John F. Alcorn

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Figure 3

Loss of B cells alters the transcriptional state of lung CD8+ T cells during memory superinfection.

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Loss of B cells alters the transcriptional state of lung CD8+ T cells du...
Bulk RNA sequencing was performed on lung CD8+ T cells from WT and μMT mice with either F/F or F/F/S infections (WT-F/F: n = 4; WT-F/F/S: n = 4; μMT-F/F: n = 3; μMT-F/F/S: n = 3). (A) Venn diagram shows the number of statistically significant differentially expressed genes (DEGs) shared between WT-F/F and WT-F/F/S groups and between μMT-F/F and μMT-F/F/S groups. (B) Top and bottom 10 Gene Ontology pathways in μMT-F/F/S versus WT-F/F/S for genes with false discovery rate adjusted P values less than 0.05 (8,831 DEGs). (C) Clustering heatmap of log2-transformed transcripts per million (TPM) values of WT-F/F/S and μMT-F/F/S mice for CD8+ T cell genes with adjusted P values (right). (D) Flow cytometry analysis showing the percentage of PD-1+LAG-3+TIM-3+CD8+ T cells (WT-F/F: n = 11; WT-F/F/S: n = 10; μMT-F/F: n = 11; μMT-F/F/S: n = 12). (E) Gene set enrichment analysis (GSEA) of a pathway in μMT-F/F/S versus WT-F/F/S (top) with P value and enrichment score (bottom). Right: Flow cytometry analysis showing the percentage of annexin V+7-AAD–CD8+ T cells (WT-F/F: n = 8; WT-F/F/S: n = 7; μMT-F/F: n = 7; μMT-F/F/S: n = 8). Graphed data are represented as mean ± SEM, and P values were determined by repeated 1-way ANOVA measures (**P < 0.01, ***P <0.001, ****P < 0.0001).

Copyright © 2026 American Society for Clinical Investigation
ISSN: 0021-9738 (print), 1558-8238 (online)

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