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Mutations in unfolded protein response regulator ATF6 cause hearing and vision loss syndrome
Eun-Jin Lee, … , Allen F. Ryan, Jonathan H. Lin
Eun-Jin Lee, … , Allen F. Ryan, Jonathan H. Lin
Published November 21, 2024
Citation Information: J Clin Invest. 2025;135(3):e175562. https://doi.org/10.1172/JCI175562.
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Research Article Genetics Ophthalmology Article has an altmetric score of 4

Mutations in unfolded protein response regulator ATF6 cause hearing and vision loss syndrome

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Abstract

Activating transcription factor 6 (ATF6) is a key regulator of the unfolded protein response (UPR) and is important for ER function and protein homeostasis in metazoan cells. Patients carrying loss-of-function ATF6 disease alleles develop the cone dysfunction disorder achromatopsia. The effect of loss of ATF6 function on other cell types, organs, and diseases in people remains unclear. Here, we report that progressive sensorineural hearing loss was a notable complaint in some patients carrying ATF6 disease alleles and that Atf6–/– mice also showed progressive auditory deficits affecting both sexes. In mice with hearing deficits, we found disorganized stereocilia on hair cells and focal loss of outer hair cells. Transcriptomics analysis of Atf6–/– cochleae revealed a marked induction of the UPR, especially through the protein kinase RNA-like endoplasmic reticulum kinase (PERK) arm. These findings identify ATF6 as an essential regulator of cochlear health and function. Furthermore, they support the idea that ATF6 inactivation in people causes progressive sensorineural hearing loss as part of a blindness-deafness genetic syndrome targeting hair cells and cone photoreceptors. Last, our genetic findings indicate that ER stress is an important pathomechanism underlying cochlear damage and hearing loss, with clinical implications for patient lifestyle modifications that minimize environmental and physiological sources of ER stress to the ear.

Authors

Eun-Jin Lee, Kyle Kim, Monica Sophia Diaz-Aguilar, Hyejung Min, Eduardo Chavez, Korina J. Steinbergs, Lance A. Safarta, Guirong Zhang, Allen F. Ryan, Jonathan H. Lin

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Figure 7

Dysregulated actin filament–/stereocilia- and channel-related gene expression in Atf6–/– cochleae.

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Dysregulated actin filament–/stereocilia- and channel-related gene expre...
(A) Violin plots (gray) show log2(FCs) in 401 actin filament–/stereocilia-related genes in Atf6–/– versus Atf6+/+ cochlear transcriptomes (****P ≤ 0.0001, 2-tailed Wilcoxon signed-rank test; see also Supplemental Table 8). The thick dashed line indicates the median, the thin dashed lines show quartiles, and the blue line indicates no FC. (B) Thirteen stereocilia genes showed statistically significant changes between Atf6–/– (red) and Atf6+/+ (blue) cochleae. Data indicate the mean ± SEM (*P ≤ 0.05 and **P ≤ 0.01, DESeq2 analysis; see also Supplemental Table 8). (C) Statistically significant changes in gene expression for chloride, potassium, and sodium channels in Atf6–/– versus Atf6+/+ cochleae are shown, with individual cochleae represented as circles. Data are presented as the mean ± SEM (*P ≤ 0.05, **P ≤ 0.01, ***P ≤ 0.001, and ****P ≤ 0.0001, DESeq2 analysis; see also Supplemental Table 9).

Copyright © 2025 American Society for Clinical Investigation
ISSN: 0021-9738 (print), 1558-8238 (online)

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