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Temporal dynamics of Wnt-dependent transcriptome reveal an oncogenic Wnt/MYC/ribosome axis
Babita Madan, … , Enrico Petretto, David M. Virshup
Babita Madan, … , Enrico Petretto, David M. Virshup
Published October 9, 2018
Citation Information: J Clin Invest. 2018;128(12):5620-5633. https://doi.org/10.1172/JCI122383.
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Research Article Cell biology Oncology Article has an altmetric score of 9

Temporal dynamics of Wnt-dependent transcriptome reveal an oncogenic Wnt/MYC/ribosome axis

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Abstract

Activating mutations in the Wnt pathway drive a variety of cancers, but the specific targets and pathways activated by Wnt ligands are not fully understood. To bridge this knowledge gap, we performed a comprehensive time-course analysis of Wnt-dependent signaling pathways in an orthotopic model of Wnt-addicted pancreatic cancer, using a porcupine (PORCN) inhibitor currently in clinical trials, and validated key results in additional Wnt-addicted models. The temporal analysis of the drug-perturbed transcriptome demonstrated direct and indirect regulation of more than 3,500 Wnt-activated genes (23% of the transcriptome). Regulation was both via Wnt/β-catenin and through the modulation of protein abundance of important transcription factors, including MYC, via Wnt-dependent stabilization of proteins (Wnt/STOP). Our study identifies a central role of Wnt/β-catenin and Wnt/STOP signaling in controlling ribosome biogenesis, a key driver of cancer proliferation.

Authors

Babita Madan, Nathan Harmston, Gahyathiri Nallan, Alex Montoya, Peter Faull, Enrico Petretto, David M. Virshup

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Figure 4

The waves of Wnt-activated genes are associated with distinct sets of TFBSs with enrichment for E-boxes in the early responding clusters.

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The waves of Wnt-activated genes are associated with distinct sets of TF...
(A) Clusters of Wnt-activated genes are enriched (FDR < 5%) for distinct TFBS motifs (hypergeometric test). Promoters of genes in each cluster were scanned for motifs present in JASPAR 2016 using FIMO (53), and enrichment for each cluster was calculated. Promoters of genes in the early downregulated clusters are enriched for canonical E-boxes. (B) MYC gene expression is partially inhibited by ETC-159 treatment of HPAF-II orthotopic tumors and a CRC PDX (18). (C) MYC protein abundance is reduced in both HPAF-II orthotopic xenografts and CRC PDX following 56 hours treatment with ETC-159. The ratio of MYC protein compared with β-actin protein abundance for each lane is indicated.

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ISSN: 0021-9738 (print), 1558-8238 (online)

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