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Lineage-specific BCL11A knockdown circumvents toxicities and reverses sickle phenotype
Christian Brendel, Swaroopa Guda, Raffaele Renella, Daniel E. Bauer, Matthew C. Canver, Young-Jo Kim, Matthew M. Heeney, Denise Klatt, Jonathan Fogel, Michael D. Milsom, Stuart H. Orkin, Richard I. Gregory, David A. Williams
Christian Brendel, Swaroopa Guda, Raffaele Renella, Daniel E. Bauer, Matthew C. Canver, Young-Jo Kim, Matthew M. Heeney, Denise Klatt, Jonathan Fogel, Michael D. Milsom, Stuart H. Orkin, Richard I. Gregory, David A. Williams
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Research Article Hematology

Lineage-specific BCL11A knockdown circumvents toxicities and reverses sickle phenotype

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Abstract

Reducing expression of the fetal hemoglobin (HbF) repressor BCL11A leads to a simultaneous increase in γ-globin expression and reduction in β-globin expression. Thus, there is interest in targeting BCL11A as a treatment for β-hemoglobinopathies, including sickle cell disease (SCD) and β-thalassemia. Here, we found that using optimized shRNAs embedded within an miRNA (shRNAmiR) architecture to achieve ubiquitous knockdown of BCL11A profoundly impaired long-term engraftment of both human and mouse hematopoietic stem cells (HSCs) despite a reduction in nonspecific cellular toxicities. BCL11A knockdown was associated with a substantial increase in S/G2-phase human HSCs after engraftment into immunodeficient (NSG) mice, a phenotype that is associated with HSC exhaustion. Lineage-specific, shRNAmiR-mediated suppression of BCL11A in erythroid cells led to stable long-term engraftment of gene-modified cells. Transduced primary normal or SCD human HSCs expressing the lineage-specific BCL11A shRNAmiR gave rise to erythroid cells with up to 90% reduction of BCL11A protein. These erythrocytes demonstrated 60%–70% γ-chain expression (vs. < 10% for negative control) and a corresponding increase in HbF. Transplantation of gene-modified murine HSCs from Berkeley sickle cell mice led to a substantial improvement of sickle-associated hemolytic anemia and reticulocytosis, key pathophysiological biomarkers of SCD. These data form the basis for a clinical trial application for treating sickle cell disease.

Authors

Christian Brendel, Swaroopa Guda, Raffaele Renella, Daniel E. Bauer, Matthew C. Canver, Young-Jo Kim, Matthew M. Heeney, Denise Klatt, Jonathan Fogel, Michael D. Milsom, Stuart H. Orkin, Richard I. Gregory, David A. Williams

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Figure 3

Efficient knockdown of BCL11A leads to high γ-globin and HBF induction in human primary cells in vitro.

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Efficient knockdown of BCL11A leads to high γ-globin and HBF induction i...
(A) Representative Western blot showing a side by side comparison of BCL11A knockdown efficiency mediated by SFFV or LCR-shRNAmiR vectors in erythroid cells differentiated in vitro from transduced hCD34+ cells. The top panels show BCL11A immunoblot (XL and L isoforms) and the bottom panels show actin as loading control. Different lanes represent different shRNA targeting sequences (see methods). (B) Quantification of Western blots derived from 3 independent experiments. Data represent the mean ± SD of densitometric analysis of immunoblots. (C) Induction of γ-globin (by RT-qPCR) and HbF induction (by HPLC) of erythroid cells differentiated in vitro from transduced hCD34+ cells. Data are the mean ± SD, n = 3. Vertical arrows indicate the shRNAmiRs chosen for further experiments. Average vector copy numbers (VCNs) are indicated below. (D) Representative HPLC plots showing HbF (black) and HbA (white) peaks for the 3 selected candidates. (E) Differentiation state of controls (mean of NT and SFFV-EGFP) and LCR-shRNAmiR (mean of 3, 5, and 8) vector-transduced CD34+ cells after 18 days of erythroid culture. n = 3. (F) Correlation between the degree of knockdown of BCL11A and induction of HbF in transduced hCD34+ cells after erythroid in vitro differentiation. Each data point represents an individual sample. LCR, β-globin locus control region and β-globin proximal promoter; NT, nontargeting shRNAmiR; ntd, nontransduced; SFFV, spleen focus-forming virus promoter.

Copyright © 2025 American Society for Clinical Investigation
ISSN: 0021-9738 (print), 1558-8238 (online)

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