Metabolic profiling of cancer cells has recently been established as a promising tool for the development of therapies and identification of cancer biomarkers. Here we characterized the metabolomic profile of human breast tumors and uncovered intrinsic metabolite signatures in these tumors using an untargeted discovery approach and validation of key metabolites. The oncometabolite 2-hydroxyglutarate (2HG) accumulated at high levels in a subset of tumors and human breast cancer cell lines. We discovered an association between increased 2HG levels and MYC pathway activation in breast cancer, and further corroborated this relationship using MYC overexpression and knockdown in human mammary epithelial and breast cancer cells. Further analyses revealed globally increased DNA methylation in 2HG-high tumors and identified a tumor subtype with high tissue 2HG and a distinct DNA methylation pattern that was associated with poor prognosis and occurred with higher frequency in African-American patients. Tumors of this subtype had a stem cell–like transcriptional signature and tended to overexpress glutaminase, suggestive of a functional relationship between glutamine and 2HG metabolism in breast cancer. Accordingly, 13C-labeled glutamine was incorporated into 2HG in cells with aberrant 2HG accumulation, whereas pharmacologic and siRNA-mediated glutaminase inhibition reduced 2HG levels. Our findings implicate 2HG as a candidate breast cancer oncometabolite associated with MYC activation and poor prognosis.
Atsushi Terunuma, Nagireddy Putluri, Prachi Mishra, Ewy A. Mathé, Tiffany H. Dorsey, Ming Yi, Tiffany A. Wallace, Haleem J. Issaq, Ming Zhou, J. Keith Killian, Holly S. Stevenson, Edward D. Karoly, King Chan, Susmita Samanta, DaRue Prieto, Tiffany Y.T. Hsu, Sarah J. Kurley, Vasanta Putluri, Rajni Sonavane, Daniel C. Edelman, Jacob Wulff, Adrienne M. Starks, Yinmeng Yang, Rick A. Kittles, Harry G. Yfantis, Dong H. Lee, Olga B. Ioffe, Rachel Schiff, Robert M. Stephens, Paul S. Meltzer, Timothy D. Veenstra, Thomas F. Westbrook, Arun Sreekumar, Stefan Ambs
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Computational models applied to metabolomics data hints at the relevance of glutamine metabolism in breast cancer
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The cancer driver genes IDH1/2, JARID1C/ KDM5C, and UTX/ KDM6A: crosstalk between histone demethylation and hypoxic reprogramming in cancer metabolism
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Metabolic alterations and the potential for targeting metabolic pathways in the treatment of multiple myeloma
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Journal of Cancer Metastasis and Treatment | 2019 |
Metabolic Plasticity and Epithelial-Mesenchymal Transition
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Glutamine Metabolism Drives Growth in Advanced Hormone Receptor Positive Breast Cancer
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Cells | 2019 |
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Frontiers in Oncology | 2019 |
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Cancer & Metabolism | 2019 |
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Integration of Metabolomic and Other Omics Data in Population-Based Study Designs: An Epidemiological Perspective
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Liver- and Microbiome-derived Bile Acids Accumulate in Human Breast Tumors and Inhibit Growth and Improve Patient Survival
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Clinical cancer research | 2019 |
MYC gene associated polymorphisms and Wilms tumor risk in Chinese children: a four-center case-control study
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Annals of translational medicine | 2019 |
2-hydroxyglutarate in cancer cells
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Antioxidants & Redox Signaling | 2019 |
Current Advances and Future Perspectives of Cerebrospinal Fluid Biopsy in Midline Brain Malignancies
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Epigenetic loss of AOX1 expression via EZH2 leads to metabolic deregulations and promotes bladder cancer progression
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Scientific Reports | 2019 |
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Frontiers in Oncology | 2019 |
Disparity in Tumor Immune Microenvironment of Breast Cancer and Prognostic Impact: Asian Versus Western Populations
CH Chen, YS Lu, AL Cheng, CS Huang, WH Kuo, MY Wang, M Chao, IC Chen, CW Kuo, TP Lu, CH Lin |
The oncologist | 2019 |
2-Hydroxyglutarate Derived from Glutamine is Associated with Disease Progression in Plasma Cell Malignancies
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JCI Insight | 2018 |
Applications of metabolomics to study cancer metabolism
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Biochimica et Biophysica Acta (BBA) - Reviews on Cancer | 2018 |
Elevated d-2-hydroxyglutarate during colitis drives progression to colorectal cancer
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Proceedings of the National Academy of Sciences | 2018 |
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The American Journal of Pathology | 2018 |
AR negative triple negative or “quadruple negative” breast cancers in African American women have an enriched basal and immune signature
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Methylation-to-Expression Feature Models of Breast Cancer Accurately Predict Overall Survival, Distant-Recurrence Free Survival, and Pathologic Complete Response in Multiple Cohorts
JA Thompson, BC Christensen, CJ Marsit |
Scientific Reports | 2018 |
Personal Mutanomes Meet Modern Oncology Drug Discovery and Precision Health
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Metabolism and Transcription in Cancer: Merging Two Classic Tales
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Frontiers in Cell and Developmental Biology | 2018 |
Metabolomics of oncogene-specific metabolic reprogramming during breast cancer
C Dai, J Arceo, J Arnold, A Sreekumar, NJ Dovichi, J Li, LE Littlepage |
Cancer & Metabolism | 2018 |
Metabolism, Activity, and Targeting of D- and L-2-Hydroxyglutarates
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Trends in Cancer | 2018 |
Urea Cycle Dysregulation Generates Clinically Relevant Genomic and Biochemical Signatures
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Signaling Pathways Regulating Redox Balance in Cancer Metabolism
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Frontiers in Oncology | 2018 |
The Omics Revolution Continues: The Maturation of High-Throughput Biological Data Sources
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Yearbook of medical informatics | 2018 |
Molecular Characterization and Clinical Relevance of Metabolic Expression Subtypes in Human Cancers
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Cell Reports | 2018 |
Wild-type IDH2 promotes the Warburg effect and tumor growth through HIF1α in lung cancer
J Li, Y He, Z Tan, J Lu, L Li, X Song, F Shi, L Xie, S You, X Luo, N Li, Y Li, X Liu, M Tang, X Weng, W Yi, J Fan, J Zhou, G Qiang, SJ Qiu, W Wu, AM Bode, Y Cao |
Theranostics | 2018 |
RaMP: A Comprehensive Relational Database of Metabolomics Pathways for Pathway Enrichment Analysis of Genes and Metabolites
B Zhang, S Hu, E Baskin, A Patt, J Siddiqui, E Mathé |
Metabolites | 2018 |
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S Fan, A Yeon, M Shahid, JT Anger, KS Eilber, O Fiehn, J Kim |
Scientific Reports | 2018 |
A Landscape of Metabolic Variation across Tumor Types
E Reznik, A Luna, BA Aksoy, EM Liu, K La, I Ostrovnaya, CJ Creighton, AA Hakimi, C Sander |
Cell Systems | 2018 |
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BM Ryan |
Carcinogenesis | 2018 |
ADHFE1 is a MYC-linked oncogene that induces metabolic reprogramming and cellular de-differentiation in breast cancer
P Mishra, W Tang, S Ambs |
Molecular & Cellular Oncology | 2018 |
A Metabolomics Study of BPTES Altered Metabolism in Human Breast Cancer Cell Lines
GA Gowda, GA Barding, J Dai, H Gu, DH Margineantu, DM Hockenbery, D Raftery |
Frontiers in Molecular Biosciences | 2018 |
Guidelines and considerations for the use of system suitability and quality control samples in mass spectrometry assays applied in untargeted clinical metabolomic studies
D Broadhurst, R Goodacre, SN Reinke, J Kuligowski, ID Wilson, MR Lewis, WB Dunn |
Metabolomics | 2018 |
D-2-hydroxyglutarate interferes with HIF-1α stability skewing T-cell metabolism towards oxidative phosphorylation and impairing Th17 polarization
M Böttcher, K Renner, R Berger, K Mentz, S Thomas, ZE Cardenas-Conejo, K Dettmer, PJ Oefner, A Mackensen, M Kreutz, D Mougiakakos |
OncoImmunology | 2018 |
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X Sun, DA Stewart, R Sandhu, EL Kirk, WW Pathmasiri, SL McRitchie, RF Clark, MA Troester, SJ Sumner, A Ahmad |
PloS one | 2018 |
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BMC bioinformatics | 2018 |
Benzylserine inhibits breast cancer cell growth by disrupting intracellular amino acid homeostasis and triggering amino acid response pathways
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BMC Cancer | 2018 |
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Acta Neuropathologica Communications | 2018 |
Amino Acid Transporters and Glutamine Metabolism in Breast Cancer
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International journal of molecular sciences | 2018 |
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Medical science monitor : international medical journal of experimental and clinical research | 2018 |
Thermal proteome profiling of breast cancer cells reveals proteasomal activation by CDK4/6 inhibitor palbociclib
TP Miettinen, J Peltier, A Härtlova, M Gierliński, VM Jansen, M Trost, M Björklund |
The EMBO Journal | 2018 |
Evidence-based approaches to reduce cancer health disparities: Discover, develop, deliver, and disseminate
PP Desai, JB Lampe, SA Bakre, RM Basha, HP Jones, JK Vishwanatha |
Journal of carcinogenesis | 2018 |
Onco-Multi-OMICS Approach: A New Frontier in Cancer Research
S Chakraborty, I Hosen, M Ahmed, HU Shekhar |
BioMed Research International | 2018 |
Metabolism and Epigenetic Interplay in Cancer: Regulation and Putative Therapeutic Targets
V Miranda-Gonçalves, A Lameirinhas, R Henrique, C Jerónimo |
Frontiers in Genetics | 2018 |
Cross-cancer Prediction: A Novel Machine Learning Approach to Discover Molecular Targets for Development of Treatments for Multiple Cancers
K Gao, D Wang, Y Huang |
Cancer informatics | 2018 |
Integrated proteotranscriptomics of breast cancer reveals globally increased protein-mRNA concordance associated with subtypes and survival
W Tang, M Zhou, TH Dorsey, DR Prieto, XW Wang, E Ruppin, TD Veenstra, S Ambs |
Genome Medicine | 2018 |
Suppression of Breast Cancer Stem Cells and Tumor Growth by the RUNX1 Transcription Factor
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Molecular cancer research : MCR | 2018 |
ADHFE1 is a Breast Cancer Oncogene and Induces Metabolic Reprogramming
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Journal of Clinical Investigation | 2017 |
Pharmacological inhibition of CaMKK2 with the selective antagonist STO-609 regresses NAFLD
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Scientific Reports | 2017 |
Promoter Methylation Modulates Indoleamine 2,3-Dioxygenase 1 Induction by Activated T Cells in Human Breast Cancers
SK Noonepalle, F Gu, EJ Lee, JH Choi, Q Han, J Kim, M Ouzounova, AY Shull, L Pei, PY Hsu, R Kolhe, F Shi, J Choi, K Chiou, TH Huang, H Korkaya, L Deng, HB Xin, S Huang, M Thangaraju, A Sreekumar, S Ambs, SC Tang, DH Munn, H Shi |
Cancer immunology research | 2017 |
Targeting EphA2 impairs cell cycle progression and growth of basal-like/triple-negative breast cancers
W Song, Y Hwang, VM Youngblood, RS Cook, JM Balko, J Chen, DM Brantley-Sieders |
Oncogene | 2017 |
Targeting the Metabolic Reprogramming That Controls Epithelial-to-Mesenchymal Transition in Aggressive Tumors
A Morandi, ML Taddei, P Chiarugi, E Giannoni |
Frontiers in Oncology | 2017 |
Metabolic Footprints and Molecular Subtypes in Breast Cancer
V Cappelletti, E Iorio, P Miodini, M Silvestri, M Dugo, MG Daidone |
Disease Markers | 2017 |
Interplay between epigenetics and metabolism in oncogenesis: mechanisms and therapeutic approaches
CC Wong, Y Qian, J Yu |
Oncogene | 2017 |
MYC and MCL1 Cooperatively Promote Chemotherapy-Resistant Breast Cancer Stem Cells via Regulation of Mitochondrial Oxidative Phosphorylation
K Lee, JM Giltnane, JM Balko, LJ Schwarz, AL Guerrero-Zotano, KE Hutchinson, MJ Nixon, MV Estrada, V Sánchez, ME Sanders, T Lee, H Gómez, A Lluch, JA Pérez-Fidalgo, MM Wolf, G Andrejeva, JC Rathmell, SW Fesik, CL Arteaga |
Cell Metabolism | 2017 |
In vivo Reprogramming of Cancer Metabolism by MYC
R Camarda, J Williams, A Goga |
Frontiers in Cell and Developmental Biology | 2017 |
Comprehensive molecular biomarker identification in breast cancer brain metastases
HJ Schulten, M Bangash, S Karim, A Dallol, D Hussein, A Merdad, FK Al-Thoubaity, J Al-Maghrabi, A Jamal, F Al-Ghamdi, H Choudhry, SS Baeesa, AG Chaudhary, MH Al-Qahtani |
Journal of Translational Medicine | 2017 |
2-Hydroxyglutarate produced by neomorphic IDH mutations suppresses homologous recombination and induces PARP inhibitor sensitivity
PL Sulkowski, CD Corso, ND Robinson, SE Scanlon, KR Purshouse, H Bai, Y Liu, RK Sundaram, DC Hegan, NR Fons, GA Breuer, Y Song, K Mishra-Gorur, HM de Feyter, RA de Graaf, YV Surovtseva, M Kachman, S Halene, M Günel, PM Glazer, RS Bindra |
Science Translational Medicine | 2017 |
L-2-Hydroxyglutarate production arises from noncanonical enzyme function at acidic pH
AM Intlekofer, B Wang, H Liu, H Shah, C Carmona-Fontaine, AS Rustenburg, S Salah, MR Gunner, JD Chodera, JR Cross, CB Thompson |
Nature Chemical Biology | 2017 |
DACH1 suppresses breast cancer as a negative regulator of CD44
H Xu, S Yu, X Yuan, J Xiong, D Kuang, RG Pestell, K Wu |
Scientific Reports | 2017 |
Coupling between d-3-phosphoglycerate dehydrogenase and d-2-hydroxyglutarate dehydrogenase drives bacterial l-serine synthesis
W Zhang, M Zhang, C Gao, Y Zhang, Y Ge, S Guo, X Guo, Z Zhou, Q Liu, Y Zhang, C Ma, F Tao, P Xu |
Proceedings of the National Academy of Sciences | 2017 |
Multivoxel magnetic resonance spectroscopy identifies enriched foci of cancer stem-like cells in high-grade gliomas
T He, T Qiu, X Wang, H Gui, X Wang, Q Hu, H Xia, G Qi, J Wu, H Ma |
OncoTargets and therapy | 2017 |
Prognostic genes of breast cancer revealed by gene co‑expression network analysis
H Shi, L Zhang, Y Qu, L Hou, L Wang, M Zheng |
Oncology Letters | 2017 |
Metabolic control of TH17 and induced Treg cell balance by an epigenetic mechanism
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Nature | 2017 |
Comparative Transcriptome Profiling Reveals Coding and Noncoding RNA Differences in NSCLC from African Americans and European Americans
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Cell Metabolism | 2016 |
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Cell | 2016 |
From Krebs to clinic: glutamine metabolism to cancer therapy
BJ Altman, ZE Stine, CV Dang |
Nature Reviews Cancer | 2016 |
Heterogeneity in Cancer Metabolism: New Concepts in an Old Field
G Gentric, V Mieulet, F Mechta-Grigoriou |
Antioxidants & Redox Signaling | 2016 |
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Molecules and Cells | 2016 |
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HX Xu, KJ Wu, YJ Tian, Q Liu, N Han, XL He, X Yuan, GS Wu, KM Wu |
Medicine | 2016 |
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Biointerphases | 2016 |
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Frontiers in Oncology | 2016 |
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Korean Journal of Radiology | 2016 |
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Scientific Reports | 2016 |
Oncometabolite D-2-Hydroxyglurate Directly Induces Epithelial-Mesenchymal Transition and is Associated with Distant Metastasis in Colorectal Cancer
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Scientific Reports | 2016 |
Compartmentation of Metabolites in Regulating Epigenomes of Cancer
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Molecular Medicine | 2016 |
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Oncogenesis | 2016 |
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Nature Reviews Cancer | 2016 |
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Enrichment of CD44 in basal-type breast cancer correlates with EMT, cancer stem cell gene profile, and prognosis
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Saccharomyces cerevisiae Forms d-2-Hydroxyglutarate and Couples Its Degradation to d-Lactate Formation via a Cytosolic Transhydrogenase
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The Journal of biological chemistry | 2016 |
Cystine addiction of triple-negative breast cancer associated with EMT augmented death signaling
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Oncogene | 2016 |
Tissue-specific and convergent metabolic transformation of cancer correlates with metastatic potential and patient survival
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Nature Communications | 2016 |
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Journal of Experimental Medicine | 2016 |
On metabolic reprogramming and tumor biology: A comprehensive survey of metabolism in breast cancer
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Journal of Clinical Investigation | 2015 |
Metabolomic profiling of hormone-dependent cancers: a bird's eye view
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Trends in Endocrinology & Metabolism | 2015 |
An Immune-Inflammation Gene Expression Signature in Prostate Tumors of Smokers
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Cancer research | 2015 |
Biological and Clinical Significance of MAD2L1 and BUB1, Genes Frequently Appearing in Expression Signatures for Breast Cancer Prognosis
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PloS one | 2015 |
Molecular Pathways: Trafficking of Metabolic Resources in the Tumor Microenvironment
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Clinical cancer research | 2015 |
Novel Therapeutic Targets of Tumor Metabolism:
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The Cancer Journal | 2015 |
Metabolic control of cancer cell stemness: Lessons from iPS cells
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Cell cycle (Georgetown, Tex.) | 2015 |
ASCT2/SLC1A5 controls glutamine uptake and tumour growth in triple-negative basal-like breast cancer
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Oncogene | 2015 |
Glutamine at focus: versatile roles in cancer
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Tumor Biology | 2015 |
Metabolic Signatures of Human Breast Cancer
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Molecular & Cellular Oncology | 2015 |
The cpk model of recessive PKD shows glutamine dependence associated with the production of the oncometabolite 2-hydroxyglutarate
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American journal of physiology. Renal physiology | 2015 |
Targeting Glutamine Induces Apoptosis: A Cancer Therapy Approach
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International journal of molecular sciences | 2015 |
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AM Intlekofer, RG Dematteo, S Venneti, LW Finley, C Lu, AR Judkins, AS Rustenburg, PB Grinaway, JD Chodera, JR Cross, CB Thompson |
Cell Metabolism | 2015 |
Registered report: Oncometabolite 2-hydroxyglutarate is a competitive inhibitor of α-ketoglutarate-dependent dioxygenases
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eLife | 2015 |
Human Phosphoglycerate Dehydrogenase Produces the Oncometabolite d -2-Hydroxyglutarate
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ACS chemical biology | 2015 |
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Acta Neuropathologica Communications | 2015 |
Oncometabolites: tailoring our genes
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FEBS Journal | 2015 |
Anti-protozoal and anti-bacterial Antibiotics that inhibit protein synthesis kill Cancer subtypes enriched for stem cell-like properties
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Cell cycle (Georgetown, Tex.) | 2015 |
Hidden among the crowd: differential DNA methylation-expression correlations in cancer occur at important oncogenic pathways
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Frontiers in Genetics | 2015 |
Burkitt lymphoma beyond MYC translocation: N-MYC and DNA methyltransferases dysregulation
GD Falco, MR Ambrosio, F Fuligni, A Onnis, C Bellan, BJ Rocca, M Navari, M Etebari, L Mundo, S Gazaneo, F Facchetti, SA Pileri, L Leoncini, PP Piccaluga |
BMC Cancer | 2015 |
LINC00472 expression is regulated by promoter methylation and associated with disease-free survival in patients with grade 2 breast cancer
Y Shen, Z Wang, LW Loo, Y Ni, W Jia, P Fei, HA Risch, D Katsaros, H Yu |
Breast Cancer Research and Treatment | 2015 |
HOT mutation screening in human glioblastomas
D Krell, P Mulholland, J Stebbing, I Tomlinson, C Bardella |
Future Science OA | 2015 |
Analysis of Matched Tumor and Normal Profiles Reveals Common Transcriptional and Epigenetic Signals Shared across Cancer Types
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PloS one | 2015 |
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Oncotarget | 2015 |
Another small molecule in the oncometabolite mix: L-2-Hydroxyglutarate in kidney cancer
Shim EH, Sudarshan S |
Oncoscience | 2015 |
Oncometabolic mutation IDH1 R132H confers a metformin-hypersensitive phenotype
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Oncotarget | 2015 |
A network-based method to evaluate quality of reproducibility of differential expression in cancer genomics studies.
Li R, Lin X, Geng H, Li Z, Li J, Lu T, Yan F |
Oncotarget | 2015 |
Putting the pieces together: How is the mitochondrial pathway of apoptosis regulated in cancer and chemotherapy?
R Elkholi, TT Renault, MN Serasinghe, JE Chipuk |
Cancer & Metabolism | 2014 |
Metabostemness: A New Cancer Hallmark
JA Menendez, Tà Alarcón |
Frontiers in Oncology | 2014 |
An unexpected alliance between stress responses to drive oncogenesis
MM Keenan, CK Ding, JT Chi |
Breast Cancer Research | 2014 |
Gerometabolites: The pseudohypoxic aging side of cancer oncometabolites
JA Menendez, T Alarcón, J Joven |
Cell cycle (Georgetown, Tex.) | 2014 |
Accumulation of 2-hydroxyglutarate in gliomas correlates with survival: a study by 3.0-tesla magnetic resonance spectroscopy
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Acta Neuropathologica Communications | 2014 |
A joint analysis of metabolomics and genetics of breast cancer
X Tang, CC Lin, I Spasojevic, ES Iversen, JT Chi, JR Marks |
Breast Cancer Research | 2014 |
Pathway-Centric Integrative Analysis Identifies RRM2 as a Prognostic Marker in Breast Cancer Associated with Poor Survival and Tamoxifen Resistance
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Neoplasia (New York, N.Y.) | 2014 |
Metabolic Profiles are Principally Different between Cancers of the Liver, Pancreas and Breast
A Budhu, A Terunuma, G Zhang, SP Hussain, S Ambs, XW Wang |
International journal of biological sciences | 2014 |
Defects in mitochondrial metabolism and cancer
E Gaude, C Frezza |
Cancer & Metabolism | 2014 |
MYC regulates the unfolded protein response and glucose and glutamine uptake in endocrine resistant breast cancer
AN Shajahan-Haq, KL Cook, JL Schwartz-Roberts, AE Eltayeb, DM Demas, AM Warri, CO Facey, LA Hilakivi-Clarke, R Clarke |
Molecular Cancer | 2014 |
A Systems Approach to Predict Oncometabolites via Context-Specific Genome-Scale Metabolic Networks
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PLoS computational biology | 2014 |
L-2-Hydroxyglutarate: An Epigenetic Modifier and Putative Oncometabolite in Renal Cancer
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Cancer Discovery | 2014 |
Downregulation of HSP60 disrupts mitochondrial proteostasis to promote tumorigenesis and progression in clear cell renal cell carcinoma
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Metabostemness: Metaboloepigenetic reprogramming of cancer stem-cell functions
Menendez JA, Corominas-Faja B, Cuyàs E, Alarcón T |
Oncoscience | 2014 |
Pulmonary surfactant: an immunological perspective
ZC Chroneos, Z Sever-Chroneos, VL Shepherd |
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