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Single-nuclei transcriptomics reveals TBX5-dependent targets in a patient with Holt-Oram syndrome
Jeffrey D. Steimle, Yi Zhao, Fansen Meng, Mikaela E. Taylor, Diwakar Turaga, Iki Adachi, Xiao Li, James F. Martin
Jeffrey D. Steimle, Yi Zhao, Fansen Meng, Mikaela E. Taylor, Diwakar Turaga, Iki Adachi, Xiao Li, James F. Martin
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Research Letter Cardiology Genetics

Single-nuclei transcriptomics reveals TBX5-dependent targets in a patient with Holt-Oram syndrome

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Abstract

Authors

Jeffrey D. Steimle, Yi Zhao, Fansen Meng, Mikaela E. Taylor, Diwakar Turaga, Iki Adachi, Xiao Li, James F. Martin

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Figure 1

Identification of TBX5-dependent targets at single-cell resolution.

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Identification of TBX5-dependent targets at single-cell resolution.
(A) ...
(A) TBX5 gene (top) and protein (bottom) with domains labeled. Patient mutation c.254C>G (p.P85R) is indicated by an arrowhead. (B) Anti-HA and wheatgerm agglutinin (WGA) immunofluorescence staining of FaDu cells transfected with HA-TBX5-WT or HA-TBX5-P85R (original magnification, ×40). Ratiometric quantification of nucleus-to-cytoplasm HA signal by box plot (n = 6). P value was determined by Welch’s 2-sample t test. (C) Volcano plot showing the distribution of differentially expressed genes (FDR <0.05 and |log2fold change| >0.25) comparing HOS and control cardiomyocytes. (D) OR by Fisher’s exact test comparing the overlap of down- and upregulated genes identified in C and in published TBX5-KO iPSC-derived cardiomyocytes (2). (E) OR by Fisher’s exact test comparing the overlap of down- and upregulated genes identified in C and published TBX5 ChIP-Seq from iPSC-derived cardiomyocytes (Supplemental Ref 14). (F) Gene ontology (GO) term analysis of TBX5-dependent genes associated with TBX5 ChIP-Seq not previously reported in cardiomyocyte-derived iPSCs or mouse tissue.

Copyright © 2025 American Society for Clinical Investigation
ISSN: 0021-9738 (print), 1558-8238 (online)

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