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The long noncoding RNA CARDINAL attenuates cardiac hypertrophy by modulating protein translation
Xin He, … , Da-Zhi Wang, Zhan-Peng Huang
Xin He, … , Da-Zhi Wang, Zhan-Peng Huang
Published May 14, 2024
Citation Information: J Clin Invest. 2024;134(13):e169112. https://doi.org/10.1172/JCI169112.
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Research Article Cardiology Development

The long noncoding RNA CARDINAL attenuates cardiac hypertrophy by modulating protein translation

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Abstract

One of the features of pathological cardiac hypertrophy is enhanced translation and protein synthesis. Translational inhibition has been shown to be an effective means of treating cardiac hypertrophy, although system-wide side effects are common. Regulators of translation, such as cardiac-specific long noncoding RNAs (lncRNAs), could provide new, more targeted therapeutic approaches to inhibit cardiac hypertrophy. Therefore, we generated mice lacking a previously identified lncRNA named CARDINAL to examine its cardiac function. We demonstrate that CARDINAL is a cardiac-specific, ribosome-associated lncRNA and show that its expression was induced in the heart upon pathological cardiac hypertrophy and that its deletion in mice exacerbated stress-induced cardiac hypertrophy and augmented protein translation. In contrast, overexpression of CARDINAL attenuated cardiac hypertrophy in vivo and in vitro and suppressed hypertrophy-induced protein translation. Mechanistically, CARDINAL interacted with developmentally regulated GTP-binding protein 1 (DRG1) and blocked its interaction with DRG family regulatory protein 1 (DFRP1); as a result, DRG1 was downregulated, thereby modulating the rate of protein translation in the heart in response to stress. This study provides evidence for the therapeutic potential of targeting cardiac-specific lncRNAs to suppress disease-induced translational changes and to treat cardiac hypertrophy and heart failure.

Authors

Xin He, Tiqun Yang, Yao Wei Lu, Gengze Wu, Gang Dai, Qing Ma, Mingming Zhang, Huimin Zhou, Tianxin Long, Youchen Yan, Zhuomin Liang, Chen Liu, William T. Pu, Yugang Dong, Jingsong Ou, Hong Chen, John D. Mably, Jiangui He, Da-Zhi Wang, Zhan-Peng Huang

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Figure 1

Identification of CARDINAL by screening for cardiac-specific, ribosome-associated lncRNAs.

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Identification of CARDINAL by screening for cardiac-specific, ribosome-a...
(A) Flow chart of screening for cardiac-specific lncRNAs in a human multiorgan RNA-Seq database (https://apps.kaessmannlab.org/lncRNA_app). (B) Heatmap showing the cardiac specificity of candidate human lncRNAs identified in A. (C) Heatmap showing the cardiac specificity of mouse orthologs of candidate lncRNAs. (D) Relative expression level of 5 lncRNA candidates detected by RNA-Seq in ribosome-free fraction and a polysome fraction following polysome profiling in hESC-CMs (SRP150416) (n = 3 for each group). (E) Relative expression levels of Cardinal in polysome fractions of mouse hearts after sham or TAC surgery (GSE131296) (n = 5 for each group). (F) Polysome profiling of HL-1 cells and results of RT-qPCR and Western blotting with different fractions. (G) Relative expression levels of Cardinal in different cell types in hearts, detected by RT-qPCR (n = 3 for each group). (H) Northern blotting of endogenous Cardinal from adult mouse hearts. Gapdh serves as a control for loading. (I) Genomic structure of Cardinal with Ribo-Seq and RNA-Seq read coverage, basewise conservation calculated by PhyloP, and coding potential calculated by PhyloCSF. Black arrows indicate 2 conserved promoter regions. Tracks of Ribo-Seq and RNA-Seq read coverage were obtained from the Hubner Laboratory (http://shiny.mdc-berlin.de/cardiac-translatome/). Tracks of basewise conservation and coding potential were obtained from the UCSC genome browser (https://genome.ucsc.edu/). (J) Single-molecule RNA-FISH of Cardinal in HL-1 cells. (K) Single-molecule RNA-FISH in cardiomyocytes from adult mice. (L) Quantification of Cardinal RNA-FISH signals in the nucleus (Nuc) and cytoplasm (Cyto) in at least 100 randomly selected adult cardiomyocytes (CM) and HL-1 cells. (M) Relative amount of Cardinal in the nucleus versus the cytoplasm detected by RT-qPCR following nucleus/cytoplasm fractionation in adult cardiomyocytes and HL-1 cells (n = 3 for each group). *P < 0.05 and **P < 0.01, by 2-tailed Student’s t test (E and G). Scale bars: 50 μm (J and K). Cyto, cytoplasm; Nuc, nucleus.

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