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Integrative omics approaches provide biological and clinical insights: examples from mitochondrial diseases
Sofia Khan, … , Anu Suomalainen, Laura L. Elo
Sofia Khan, … , Anu Suomalainen, Laura L. Elo
Published January 2, 2020
Citation Information: J Clin Invest. 2020;130(1):20-28. https://doi.org/10.1172/JCI129202.
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Review Series

Integrative omics approaches provide biological and clinical insights: examples from mitochondrial diseases

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Abstract

High-throughput technologies for genomics, transcriptomics, proteomics, and metabolomics, and integrative analysis of these data, enable new, systems-level insights into disease pathogenesis. Mitochondrial diseases are an excellent target for hypothesis-generating omics approaches, as the disease group is mechanistically exceptionally complex. Although the genetic background in mitochondrial diseases is in either the nuclear or the mitochondrial genome, the typical downstream effect is dysfunction of the mitochondrial respiratory chain. However, the clinical manifestations show unprecedented variability, including either systemic or tissue-specific effects across multiple organ systems, with mild to severe symptoms, and occurring at any age. So far, the omics approaches have provided mechanistic understanding of tissue-specificity and potential treatment options for mitochondrial diseases, such as metabolome remodeling. However, no curative treatments exist, suggesting that novel approaches are needed. In this Review, we discuss omics approaches and discoveries with the potential to elucidate mechanisms of and therapies for mitochondrial diseases.

Authors

Sofia Khan, Gulayse Ince-Dunn, Anu Suomalainen, Laura L. Elo

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Figure 2

Multi-omics data analysis workflow using integrative analysis approaches to identify a set of multibiomarkers for downstream validation.

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Multi-omics data analysis workflow using integrative analysis approaches...
Integrative approaches commonly include clustering and association analysis of the omics features that can be inspected in networks. Enrichment and mapping of candidate multibiomarkers to known canonical pathways can be used to interpret the findings. Metabolic data with or without accompanying transcriptome-level data can be analyzed by GEMs that combine data from various sources to represent the metabolism of a given biological system. The illustration of genome-scale metabolic models is adapted with permission from Cell Systems (105).

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ISSN: 0021-9738 (print), 1558-8238 (online)

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