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RBFox1-mediated RNA splicing regulates cardiac hypertrophy and heart failure
Chen Gao, … , Jau-Nian Chen, Yibin Wang
Chen Gao, … , Jau-Nian Chen, Yibin Wang
Published November 30, 2015
Citation Information: J Clin Invest. 2016;126(1):195-206. https://doi.org/10.1172/JCI84015.
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Research Article Cardiology Article has an altmetric score of 4

RBFox1-mediated RNA splicing regulates cardiac hypertrophy and heart failure

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Abstract

RNA splicing is a major contributor to total transcriptome complexity; however, the functional role and regulation of splicing in heart failure remain poorly understood. Here, we used a total transcriptome profiling and bioinformatic analysis approach and identified a muscle-specific isoform of an RNA splicing regulator, RBFox1 (also known as A2BP1), as a prominent regulator of alternative RNA splicing during heart failure. Evaluation of developing murine and zebrafish hearts revealed that RBFox1 is induced during postnatal cardiac maturation. However, we found that RBFox1 is markedly diminished in failing human and mouse hearts. In a mouse model, RBFox1 deficiency in the heart promoted pressure overload–induced heart failure. We determined that RBFox1 is a potent regulator of RNA splicing and is required for a conserved splicing process of transcription factor MEF2 family members that yields different MEF2 isoforms with differential effects on cardiac hypertrophic gene expression. Finally, induction of RBFox1 expression in murine pressure overload models substantially attenuated cardiac hypertrophy and pathological manifestations. Together, this study identifies regulation of RNA splicing by RBFox1 as an important player in transcriptome reprogramming during heart failure that influence pathogenesis of the disease.

Authors

Chen Gao, Shuxun Ren, Jae-Hyung Lee, Jinsong Qiu, Douglas J. Chapski, Christoph D. Rau, Yu Zhou, Maha Abdellatif, Astushi Nakano, Thomas M. Vondriska, Xinshu Xiao, Xiang-Dong Fu, Jau-Nian Chen, Yibin Wang

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Figure 2

RBFox1 specifically regulates MEF2 α exon inclusion change in failing hearts.

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RBFox1 specifically regulates MEF2 α exon inclusion change in failing he...
(A) Schematic of the MEF2 gene splicing variants at α exon. (B–D) Quantification of the MEF2 α1/α2 ratio in nonfailing (NF) and dilated cardiomyopathy (DCM) human heart samples (n = 4 from each group). (E–G) Exon-specific RNA reads of the Mef2 genes in failing heart and sham samples based on an RNA-seq data set (43). Black arrows represent the locations of mutually exclusive exons (MXEs) in each gene, and the detail expression profiles (presented as reads per kilobase per million mapped read values) of MXEs at higher magnification are shown to the right. (H) qRT-PCR quantification of Mef2 (Mef2a, Mef2c, and Mef2d) α1 versus α2 transcript ratios from sham hearts (Control) and hearts after TAC (HF) (n = 3 from each group). (I) MEF2 α1/α2 transcript ratio in the control and RBFox1-overexpressing NRVMs (n = 3 from each group). (J) Schematic of the Mef2d α2 exon minigene reporter constructs containing wild-type (Mef2d-α2) or mutated (Mef2d-α2M) RBFox1-binding motif as indicated. Different minigene reporter constructs were transfected alone or in combination with an RBFox1-expressing vector in HEK293 cells. Exon inclusion level was measured by densitometry analysis of RT-PCR products separated by electrophoresis on a 4% agarose gel and indicated as inclusion/exclusion ratio. (K) Cross-link RNA immunoprecipitation assay of Mef2d pre-mRNA sequence. Myoblasts were infected with dominant-negative RBFox1 (DN-RBFox1) and RBFox1 and compared with the mock infected cells. RBFox1 binding to different regions of Mef2d pre-mRNA was detected by semiquantitative RT-PCR as indicated. *P < 0.05, **P < 0.01, Student’s t test (B–D, H, and I).

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ISSN: 0021-9738 (print), 1558-8238 (online)

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