Intratumor genetic heterogeneity is a key mechanism underlying tumor progression and therapeutic resistance. The prevailing model for explaining intratumor diversity, the clonal evolution model, has recently been challenged by proponents of the cancer stem cell hypothesis. To investigate this issue, we performed combined analyses of markers associated with cellular differentiation states and genotypic alterations in human breast carcinomas and evaluated diversity with ecological and evolutionary methods. Our analyses showed a high degree of genetic heterogeneity both within and between distinct tumor cell populations that were defined based on markers of cellular phenotypes including stem cell–like characteristics. In several tumors, stem cell–like and more-differentiated cancer cell populations were genetically distinct, leading us to question the validity of a simple differentiation hierarchy–based cancer stem cell model. The degree of diversity correlated with clinically relevant breast tumor subtypes and in some tumors was markedly different between the in situ and invasive cell populations. We also found that diversity measures were associated with clinical variables. Our findings highlight the importance of genetic diversity in intratumor heterogeneity and the value of analyzing tumors as distinct populations of cancer cells to more effectively plan treatments.
So Yeon Park, Mithat Gönen, Hee Jung Kim, Franziska Michor, Kornelia Polyak
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Nature | 2014 |
Microfluidics for single-cell genetic analysis
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Dielectrophoretic Capture and Genetic Analysis of Single Neuroblastoma Tumor Cells
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PLoS computational biology | 2014 |
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Genome biology | 2014 |
Molecular profiling of single circulating tumor cells with diagnostic intention
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Genetic and Phenotypic Diversity in Breast Tumor Metastases
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Combining functional genomics strategies identifies modular heterogeneity of breast cancer intrinsic subtypes
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Nature Biotechnology | 2013 |
Evolutionary foundations for cancer biology
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Phylogenetic analysis of multiprobe fluorescence in situ hybridization data from tumor cell populations
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Nucleic Acids Research | 2013 |
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CA Klein |
Nature | 2013 |
Single-cell mutational profiling and clonal phylogeny in cancer
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Genome research | 2013 |
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J Sung, PJ Kim, S Ma, CC Funk, AT Magis, Y Wang, L Hood, D Geman, ND Price |
PLoS computational biology | 2013 |
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PloS one | 2013 |
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High intra-tumor genetic heterogeneity is related to worse outcome in head and neck squamous cell carcinoma
EA Mroz, AD Tward, CR Pickering, JN Myers, RL Ferris, JW Rocco |
Cancer | 2013 |
Established breast cancer stem cell markers do not correlate with in vivo tumorigenicity of tumor-initiating cells
C Lehmann, G Jobs, M Thomas, H Burtscher, M Kubbies |
International journal of oncology | 2012 |
Tumor Heterogeneity: Mechanisms and Bases for a Reliable Application of Molecular Marker Design
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International journal of molecular sciences | 2012 |
Understanding cancer stem cell heterogeneity and plasticity
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Cell Research | 2012 |
Clonal evolution in cancer
M Greaves, CC Maley |
Nature | 2012 |
Genomic and mutational profiling of ductal carcinomas in situ and matched adjacent invasive breast cancers reveals intra-tumour genetic heterogeneity and clonal selection
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The Journal of Pathology | 2012 |
Intra-tumour heterogeneity: a looking glass for cancer?
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Nature Reviews Cancer | 2012 |
Selfish Spermatogonial Selection: Evidence from an Immunohistochemical Screen in Testes of Elderly Men
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PloS one | 2012 |
Cancer in Light of Experimental Evolution
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Current Biology | 2012 |
Spontaneous Formation of Tumorigenic Hybrids between Breast Cancer and Multipotent Stromal Cells Is a Source of Tumor Heterogeneity
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The American Journal of Pathology | 2012 |
Signatures of tumor–immune interactions as biomarkers for breast cancer prognosis
MH Manjili, K Najarian, XY Wang |
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Single-Cell Genetic Analysis of Ductal Carcinoma in Situ and Invasive Breast Cancer Reveals Enormous Tumor Heterogeneity yet Conserved Genomic Imbalances and Gain of MYC during Progression
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The American Journal of Pathology | 2012 |
An evolutionary explanation for the presence of cancer nonstem cells in neoplasms
K Sprouffske, CA Aktipis, JP Radich, M Carroll, AM Nedelcu, CC Maley |
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MATH, a novel measure of intratumor genetic heterogeneity, is high in poor-outcome classes of head and neck squamous cell carcinoma
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Evolutionary pathways in BRCA1-associated breast tumors
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Potential for the embryonic morphogen Nodal as a prognostic and predictive biomarker in breast cancer
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Trends in genetics : TIG | 2012 |
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Clinical cancer research | 2012 |
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Journal of Clinical Investigation | 2011 |
Heterogeneity in breast cancer
Kornelia Polyak |
Journal of Clinical Investigation | 2011 |
Overlooking Evolution: A Systematic Analysis of Cancer Relapse and Therapeutic Resistance Research
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PloS one | 2011 |
Phenotypic Heterogeneity of Breast Cancer Stem Cells
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Journal of Oncology | 2011 |
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Nature | 2011 |
Future medical applications of single-cell sequencing in cancer
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Genome Medicine | 2011 |
The sociobiology of molecular systems
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Nature Reviews Genetics | 2011 |
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Nature Methods | 2011 |
Evidence of distinct tumour-propagating cell populations with different properties in primary human hepatocellular carcinoma
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PloS one | 2011 |
Modeling evolutionary dynamics of epigenetic mutations in hierarchically organized tumors
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PLoS computational biology | 2011 |
Evolutionary dynamics of intratumor heterogeneity
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PloS one | 2011 |
Human primary ductal carcinoma in situ (DCIS) subtype-specific pathology is preserved in a mouse intraductal (MIND) xenograft model
KE Valdez, F Fan, W Smith, DC Allred, D Medina, F Behbod |
The Journal of Pathology | 2011 |
Maintenance of primary tumor phenotype and genotype in glioblastoma stem cells
H Wakimoto, G Mohapatra, R Kanai, WT Curry, S Yip, M Nitta, AP Patel, ZR Barnard, AO Stemmer-Rachamimov, DN Louis, RL Martuza, SD Rabkin |
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Single-cell dissection of transcriptional heterogeneity in human colon tumors
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Nature Biotechnology | 2011 |
Monosomy of chromosome 8 could be considered as a primary preneoplastic event in breast cancer: A preliminary study
FA Parra-Pérez, A Zavala-Pompa, J Pacheco-Calleros, EI Cortés-Gutiérrez, RM Cerda-Flores, S Lara-Miranda, MI Dávila-Rodríguez |
Oncology Letters | 2011 |
Accurate reconstruction of the temporal order of mutations in neoplastic progression
K Sprouffske, JW Pepper, CC Maley |
Cancer prevention research (Philadelphia, Pa.) | 2011 |
A functional in vivo screen for regulators of tumor progression identifies HOXB2 as a regulator of tumor growth in breast cancer
PJ Boimel, C Cruz, JE Segall |
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Maintenance of hormone responsiveness in luminal breast cancers by suppression of Notch
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Proceedings of the National Academy of Sciences | 2011 |
Evolution of human BCR–ABL1 lymphoblastic leukaemia-initiating cells
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Nature | 2011 |
The role of genetic diversity in cancer
Lauren M.F. Merlo, Carlo Maley |
Journal of Clinical Investigation | 2010 |
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Nature | 2010 |
Molecular Markers for the Diagnosis and Management of Ductal Carcinoma In Situ
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JNCI Monographs | 2010 |
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Methylation profiling with a panel of cancer related genes: Association with estrogen receptor, TP53 mutation status and expression subtypes in sporadic breast cancer
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Cancer stem cells in glioblastoma—molecular signaling and therapeutic targeting
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Exploration of the postponing mechanism that delays carcinoma onset
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Cancer Cell International | 2010 |
Potential Therapeutic Implications of Cancer Stem Cells in Glioblastoma
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Combined inhibitory effect of formestane and herceptin on a subpopulation of CD44+/CD24low breast cancer cells
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Cancer Science | 2010 |
Population genetics of cancer cell clones: possible implications of cancer stem cells
CT Naugler |
Theoretical Biology and Medical Modelling | 2010 |
Gene Expression Profiles of Estrogen Receptor–Positive and Estrogen Receptor–Negative Breast Cancers Are Detectable in Histologically Normal Breast Epithelium
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Clinical cancer research | 2010 |
The Origins and Implications of Intratumor Heterogeneity: Fig. 1
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Cancer prevention research (Philadelphia, Pa.) | 2010 |
A Comprehensive Survey of Clonal Diversity Measures in Barrett's Esophagus as Biomarkers of Progression to Esophageal Adenocarcinoma
LM Merlo, NA Shah, X Li, PL Blount, TL Vaughan, BJ Reid, CC Maley |
Cancer prevention research (Philadelphia, Pa.) | 2010 |
Pulmonary surfactant: an immunological perspective
ZC Chroneos, Z Sever-Chroneos, VL Shepherd |
Cellular physiology and biochemistry : international journal of experimental cellular physiology, biochemistry, and pharmacology | 2009 |
Tumor heterogeneity: causes and consequences
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Biochimica et Biophysica Acta | 2009 |