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Citations to this article

Carbohydrate fermentation in the human colon and its relation to acetate concentrations in venous blood.
E W Pomare, … , W J Branch, J H Cummings
E W Pomare, … , W J Branch, J H Cummings
Published May 1, 1985
Citation Information: J Clin Invest. 1985;75(5):1448-1454. https://doi.org/10.1172/JCI111847.
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Carbohydrate fermentation in the human colon and its relation to acetate concentrations in venous blood.

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Abstract

There is now substantial evidence that some dietary polysaccharides, notably dietary fiber, escape absorption in the small bowel and are then broken down in the large intestine of man. The main end products of this colonic digestive process, which is anerobic, are short chain fatty acids (SCFA), and acetic, propionic, and butyric acids. Although these acids are known to be absorbed from the colon, their subsequent fate and significance is unknown. We have measured venous blood SCFA levels in healthy subjects after a 16-h fast, and then following oral doses of either 50 mmol SCFA, 5, 10, or 20 g doses of the fermentable carbohydrate lactulose, or 20 g of pectin. Fasting venous blood acetate was 53.8 +/- 4.4 mumol/liter (SEM) (n = 14). Fasting arterial blood acetate, taken simultaneously with venous blood in six subjects, was higher; 125.6 +/- 13.5 mumol/liter (arterial) vs. 61.1 +/- 6.9 mumol/liter (venous). Significant levels of propionate or butyrate were not detected in any blood samples. Following an oral dose of 50 mmol mixed SCFA, venous blood acetate reached a peak of 194.1 +/- 57.9 mumol/liter at 45 min and returned to fasting levels at 2 h. Blood acetate also rose in response to lactulose, peak levels occurring 2-4 h after the dose: 5 g, 98.6 +/- 23.1 mumol/liter; 10 g, 127.3 +/- 18.2 mumol/liter; and 20 g, 181.3 +/- 23.9 mumol/liter. Pectin fermentation was much slower, with blood acetate levels starting to rise after 6 h and remaining elevated at about twice fasting levels for the subsequent 18 h. However, areas under the blood acetate curves were closely related (r = 0.97; n = 5), whatever the source of acetate. These studies show that the large intestine makes an important contribution to blood acetate levels in man and that fermentation may influence metabolic processes well beyond the wall of this organ.

Authors

E W Pomare, W J Branch, J H Cummings

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RM Razali, J Rodriguez-Flores, M Ghorbani, H Naeem, W Aamer, E Aliyev, A Jubran, SI Ismail, W Al-Muftah, R Badji, H Mbarek, D Darwish, T Fadl, H Yasin, M Ennaifar, R Abdellatif, F Alkuwari, M Alvi, Y Al-Sarraj, C Saad, A Althani, E Fethnou, F Qafoud, E Alkhayat, N Afifi, S Tomei, W Liu, S Lorenz, N Syed, H Almabrazi, FR Vempalli, R Temanni, TA Saqri, M Khatib, M Hamza, TA Zaid, AE Khouly, T Pathare, S Poolat, R Al-Ali, O Albagha, S Al-Khodor, M Alshafai, R Badii, L Chouchane, X Estivill, KA Fakhro, Y Mokrab, JV Puthen, K Suhre, Z Tatari, AG Clark, KA Fakhro, Y Mokrab
Nature Communications 2021
Gene regulation of adult skeletogenesis in starfish and modifications during gene network co-option
A Yamazaki, S Yamakawa, Y Morino, Y Sasakura, H Wada
Scientific Reports 2021
Cenozoic climatic changes drive evolution and dispersal of coastal benthic foraminifera in the Southern Ocean
W Majewski, M Holzmann, AJ Gooday, A Majda, T Mamos, J Pawlowski
Scientific Reports 2021
Comparative mitogenomics of Drosophilidae and the evolution of the Zygothrica genus group (Diptera, Drosophilidae)
MH Bessa, FC de Ré, RD de Moura, EL Loreto, LJ Robe
Genetica 2021
Conserved ancestral tropical niche but different continental histories explain the latitudinal diversity gradient in brush-footed butterflies
N Chazot, FL Condamine, G Dudas, C Peña, U Kodandaramaiah, P Matos-Maraví, K Aduse-Poku, M Elias, AD Warren, DJ Lohman, CM Penz, P DeVries, ZF Fric, S Nylin, C Müller, AY Kawahara, KL Silva-Brandão, G Lamas, I Kleckova, A Zubek, E Ortiz-Acevedo, R Vila, RI Vane-Wright, SP Mullen, CD Jiggins, CW Wheat, AV Freitas, N Wahlberg
Nature Communications 2021
Dissemination of Mycobacterium abscessus via global transmission networks
C Ruis, JM Bryant, SC Bell, R Thomson, RM Davidson, NA Hasan, J van Ingen, M Strong, RA Floto, J Parkhill
Nature Microbiology 2021
Eight species of Lintonium Stunkard & Nigrelli, 1930 (Digenea: Fellodistomidae) in Australian tetraodontiform fishes
TH Cribb, SB Martin, PE Diaz, RA Bray, SC Cutmore
Systematic Parasitology 2021
DdaSTE12 is involved in trap formation, ring inflation, conidiation, and vegetative growth in the nematode-trapping fungus Drechslerella dactyloides
Y Fan, W Zhang, Y Chen, M Xiang, X Liu
Applied Microbiology and Biotechnology 2021
Phylogeny and subcellular localization analyses reveal distinctions in monocot and eudicot class IV acyl-CoA-binding proteins
X Jiang, L Xu, Y Gao, M He, Q Bu, W Meng
Planta 2021
Verrucomicrobiota are specialist consumers of sulfated methyl pentoses during diatom blooms
LH Orellana, TB Francis, M Ferraro, JH Hehemann, BM Fuchs, RI Amann
The ISME Journal 2021
Multi-tissue transcriptome analysis of two Begonia species reveals dynamic patterns of evolution in the chalcone synthase gene family
K Emelianova, AM Martínez, L Campos-Dominguez, C Kidner
Scientific Reports 2021
The genomic architecture of EBV and infected gastric tissue from precursor lesions to carcinoma
ZH Chen, SM Yan, , Q Zhang, SX Liu, Y Liu, YL Luo, C Zhang, M Xu, YF Zhao, LY Huang, BL Liu, TL Xia, DZ Xu, Y Liang, YM Chen, W Wang, SQ Yuan, HZ Zhang, JP Yun, WW Zhai, MS Zeng, F Bai, Q Zhong
Genome Medicine 2021
Mycorrhizal status is a poor predictor of the distribution of herbaceous species along the gradient of soil nutrient availability in coastal and grassland habitats
M Bitomský, RJ Pakeman, H Schaefer, J Klimešová, S Rūsiņa, Z Lososová, P Mládková, M Duchoslav
Mycorrhiza 2021
Distinct patterns of within-host virus populations between two subgroups of human respiratory syncytial virus
GL Lin, SB Drysdale, MD Snape, D OConnor, A Brown, G MacIntyre-Cockett, E Mellado-Gomez, M de Cesare, D Bonsall, MA Ansari, D Öner, J Aerssens, C Butler, L Bont, P Openshaw, F Martinón-Torres, H Nair, R Bowden, H Campbell, S Cunningham, D Bogaert, P Beutels, J Wildenbeest, E Clutterbuck, J McGinley, R Thwaites, D Wiseman, A Gómez-Carballa, C Rodriguez-Tenreiro, I Rivero-Calle, A Dacosta-Urbieta, T Heikkinen, A Meijer, TK Fischer, M van den Berge, C Giaquinto, M Abram, P Dormitzer, S Stoszek, S Gallichan, B Rosen, E Molero, N Machin, M Spadetto, T Golubchik, AJ Pollard
Nature Communications 2021
The genome of the thin-necked bladder worm Taenia hydatigena reveals evolutionary strategies for helminth survival
S Wang, X Liu, Z Liu, Y Wang, A Guo, W Huang, Q Wang, S Zhang, G Zhu, X Luo, X Zhu, X Cai
2021
Resource–diversity relationships in bacterial communities reflect the network structure of microbial metabolism
MD Bello, H Lee, A Goyal, J Gore
Nature Ecology & Evolution 2021
Maximum antigen diversification in a lyme bacterial population and evolutionary strategies to overcome pathogen diversity
L Di, S Akther, E Bezrucenkovas, L Ivanova, B Sulkow, B Wu, S Mneimneh, M Gomes-Solecki, WG Qiu
The ISME Journal 2021
The metabolic footprint of Clostridia and Erysipelotrichia reveals their role in depleting sugar alcohols in the cecum
CR Tiffany, JY Lee, AW Rogers, EE Olsan, P Morales, F Faber, AJ Bäumler
Microbiome 2021
Aborjinia corallicola sp. n., a new nematode species (Nematoda: Marimermithidae) associated with the bamboo coral Acanella arbuscula (Johnson)
R Westerman, B de Moura Neves, M Ahmed, O Holovachov
Systematic Parasitology 2021
Increased abundance of secreted hydrolytic enzymes and secondary metabolite gene clusters define the genomes of latent plant pathogens in the Botryosphaeriaceae
JH Nagel, MJ Wingfield, B Slippers
BMC Genomics 2021
Assembly of the complete mitochondrial genome of an endemic plant, Scutellaria tsinyunensis, revealed the existence of two conformations generated by a repeat-mediated recombination
J Li, Y Xu, Y Shan, X Pei, S Yong, C Liu, J Yu
Planta 2021
Sandaracinobacteroides hominis gen. nov., sp. nov., isolated from human skin
PH Qu, HM Luo, JH Feng, S Li, C Chen, L Dong, YZ Ming, WJ Li, Y Lin
Archives of Microbiology 2021
Molecular and morphological phylogeny of host-specific Dactylogyrus parasites (Monogenea) sheds new light on the puzzling Middle Eastern origin of European and African lineages
M Benovics, F Nejat, A Abdoli, A Šimková
Parasites & vectors 2021
A novel characteristic of a phytoplankton as a potential source of straight-chain alkanes
N Harada, Y Hirose, S Chihong, H Kurita, M Sato, J Onodera, K Murata, F Itoh
Scientific Reports 2021
Haplotype-resolved genome assembly provides insights into evolutionary history of the tea plant Camellia sinensis
X Zhang, S Chen, L Shi, D Gong, S Zhang, Q Zhao, D Zhan, L Vasseur, Y Wang, J Yu, Z Liao, X Xu, R Qi, W Wang, Y Ma, P Wang, N Ye, D Ma, Y Shi, H Wang, X Ma, X Kong, J Lin, L Wei, Y Ma, R Li, G Hu, H He, L Zhang, R Ming, G Wang, H Tang, M You
Nature Genetics 2021
Nationwide genomic atlas of soil-dwelling Listeria reveals effects of selection and population ecology on pangenome evolution
J Liao, X Guo, DL Weller, S Pollak, DH Buckley, M Wiedmann, OX Cordero
Nature Microbiology 2021
SARS-CoV-2 RBD antibodies that maximize breadth and resistance to escape
TN Starr, N Czudnochowski, Z Liu, F Zatta, YJ Park, A Addetia, D Pinto, M Beltramello, P Hernandez, AJ Greaney, R Marzi, WG Glass, I Zhang, AS Dingens, JE Bowen, MA Tortorici, AC Walls, JA Wojcechowskyj, AD Marco, LE Rosen, J Zhou, M Montiel-Ruiz, H Kaiser, JR Dillen, H Tucker, J Bassi, C Silacci-Fregni, MP Housley, J di Iulio, G Lombardo, M Agostini, N Sprugasci, K Culap, S Jaconi, M Meury, E Dellota, R Abdelnabi, SY Foo, E Cameroni, S Stumpf, TI Croll, JC Nix, C Havenar-Daughton, L Piccoli, F Benigni, J Neyts, A Telenti, FA Lempp, MS Pizzuto, JD Chodera, CM Hebner, HW Virgin, SP Whelan, D Veesler, D Corti, JD Bloom, G Snell
Nature 2021
Adaptive divergence and post-zygotic barriers to gene flow between sympatric populations of a herbivorous mite
E Villacis-Perez, S Snoeck, AH Kurlovs, RM Clark, JA Breeuwer, TV Leeuwen
2021
Mycobacteria Protocols
T Parish, A Kumar
2021
Mycobacteria Protocols
T Parish, A Kumar
2021
Mycobacteria Protocols
T Parish, A Kumar
2021
Genomic methods reveal independent demographic histories despite strong morphological conservatism in fish species
JM Neves, ZJ Nolen, NN Fabré, T Mott, RJ Pereira
Heredity 2021
Molecular Identification and Antimicrobial Activity of Foliar Endophytic Fungi on the Brazilian Pepper Tree (Schinus terebinthifolius) Reveal New Species of Diaporthe
GD dos Santos, RR Gomes, R Gonçalves, G Fornari, BH Maia, C Schmidt-Dannert, F Gaascht, C Glienke, GX Schneider, IR Colombo, J Degenhardt-Goldbach, JL Pietsch, MC Costa-Ribeiro, VA Vicente
Current Microbiology 2021
Mallocybe heimii ectomycorrhizae with Cistus creticus and Pinus halepensis in Mediterranean littoral sand dunes — assessment of phylogenetic relationships to M. arenaria and M. agardhii
V Daskalopoulos, E Polemis, V Fryssouli, L Kottis, D Bandini, B Dima, GI Zervakis
Mycorrhiza 2021
Evolution of the MLO gene families in octoploid strawberry (Fragaria ×ananassa) and progenitor diploid species identified potential genes for strawberry powdery mildew resistance
RR Tapia, CR Barbey, S Chandra, KM Folta, VM Whitaker, S Lee
Horticulture Research 2021
Unravelling hybridization in Phytophthora using phylogenomics and genome size estimation
KV Poucke, A Haegeman, T Goedefroit, F Focquet, L Leus, MH Jung, C Nave, MA Redondo, C Husson, K Kostov, A Lyubenova, P Christova, A Chandelier, S Slavov, A de Cock, P Bonants, S Werres, JO Palau, B Marçais, T Jung, J Stenlid, T Ruttink, K Heungens
IMA Fungus 2021
Reclassification of Facklamia ignava, Facklamia sourekii and Facklamia tabacinasalis as Falseniella ignava gen. nov., comb. nov., Hutsoniella sourekii gen. nov., comb. nov., and Ruoffia tabacinasalis gen. nov., comb. nov., and description of Ruoffia halotolerans sp. nov., isolated from hypersaline Inland Sea of Qatar
R Fotedar, K Sankaranarayanan, ME Caldwell, A Zeyara, AA Malki, R Kaul, HA Shamari, M Ali, MA Marri, PA Lawson
Antonie van Leeuwenhoek 2021
Corynebacterium rouxii, a recently described member of the C. diphtheriae group isolated from three dogs with ulcerative skin lesions
K Schlez, T Eisenberg, J Rau, S Dubielzig, M Kornmayer, G Wolf, A Berger, A Dangel, C Hoffmann, C Ewers, A Sing
Antonie van Leeuwenhoek 2021
Somatic variations led to the selection of acidic and acidless orange cultivars
L Wang, Y Huang, ZA Liu, J He, X Jiang, F He, Z Lu, S Yang, P Chen, H Yu, B Zeng, L Ke, Z Xie, RM Larkin, D Jiang, R Ming, ES Buckler, X Deng, Q Xu
Nature Plants 2021
Fensomea setacea, gen. & sp. nov. (Cladopyxidaceae, Dinophyceae), is neither gonyaulacoid nor peridinioid as inferred from morphological and molecular data
M Gottschling, MC Carbonell-Moore, KN Mertens, M Kirsch, M Elbrächter, U Tillmann
Scientific Reports 2021
Genomic insights into diverse bacterial taxa that degrade extracellular DNA in marine sediments
K Wasmund, C Pelikan, A Schintlmeister, M Wagner, M Watzka, A Richter, S Bhatnagar, A Noel, CR Hubert, T Rattei, T Hofmann, B Hausmann, CW Herbold, A Loy
Nature Microbiology 2021
Population matched (pm) germline allelic variants of immunoglobulin (IG) loci: Relevance in infectious diseases and vaccination studies in human populations
I Khatri, MA Berkowska, EB van den Akker, C Teodosio, MJ Reinders, JJ van Dongen
Genes and Immunity 2021
18S rRNA variability maps reveal three highly divergent, conserved motifs within Rotifera
OR Bininda-Emonds
2021
Genetic changes and evolutionary analysis of canine circovirus
L Wang, Y li, Z Guo, Y Yi, H Zhang, H Shangguan, C Huang, J Ge
Archives of Virology 2021
The queen conch mitogenome: intra- and interspecific mitogenomic variability in Strombidae and phylogenetic considerations within the Hypsogastropoda
S Machkour-MRabet, MM Hanes, JJ Martínez-Noguez, J Cruz-Medina, FJ León
Scientific Reports 2021
Comparative analysis of mite genomes reveals positive selection for diet adaptation
Q Liu, Y Deng, A Song, Y Xiang, D Chen, L Wei
2021
The evolution of hard tick-borne relapsing fever borreliae is correlated with vector species rather than geographical distance
R Nakao, K Kasama, B Boldbaatar, Y Ogura, H Kawabata, A Toyoda, T Hayashi, A Takano, K Maeda
2021
Gorgorhynchoides pseudocarangis n. sp. (Acanthocephala: Isthmosacanthidae) from Pseudocaranx dentex (Carangidae) in southeast Queensland, Australia, with comments on the Isthmosacanthidae
DC Huston, LR Smales
Systematic Parasitology 2021
Base-substitution mutation rate across the nuclear genome of Alpheus snapping shrimp and the timing of isolation by the Isthmus of Panama
K Silliman, JL Indorf, N Knowlton, WE Browne, C Hurt
2021
Plastome structure and phylogenetic relationships of Styracaceae (Ericales)
XL Cai, JB Landis, HX Wang, JH Wang, ZX Zhu, HF Wang
2021
Metagenomics and Culture-Based Diversity Analysis of the Bacterial Community in the Zharkent Geothermal Spring in Kazakhstan
A Mashzhan, R Javier-López, A Kistaubayeva, I Savitskaya, NK Birkeland
Current Microbiology 2021
Prisons as ecological drivers of fitness-compensated multidrug-resistant Mycobacterium tuberculosis
SM Gygli, C Loiseau, L Jugheli, N Adamia, A Trauner, M Reinhard, A Ross, S Borrell, R Aspindzelashvili, N Maghradze, K Reither, C Beisel, N Tukvadze, Z Avaliani, S Gagneux
Nature Medicine 2021
Prevalence and relationship of endosymbiotic Wolbachia in the butterfly genus Erebia
K Lucek, S Bouaouina, A Jospin, A Grill, JM de Vos
2021
Highly rearranged mitochondrial genome in Falcolipeurus lice (Phthiraptera: Philopteridae) from endangered eagles
Y Nie, YT Fu, Y Zhang, YP Deng, W Wang, Y Tu, GH Liu
Parasites & vectors 2021
Reconstruction of ancient microbial genomes from the human gut
MC Wibowo, Z Yang, M Borry, A Hübner, KD Huang, BT Tierney, S Zimmerman, F Barajas-Olmos, C Contreras-Cubas, H García-Ortiz, A Martínez-Hernández, JM Luber, P Kirstahler, T Blohm, FE Smiley, R Arnold, SA Ballal, SJ Pamp, J Russ, F Maixner, O Rota-Stabelli, N Segata, K Reinhard, L Orozco, C Warinner, M Snow, S LeBlanc, AD Kostic
Nature 2021
The genome of Nautilus pompilius illuminates eye evolution and biomineralization
Y Zhang, F Mao, H Mu, M Huang, Y Bao, L Wang, NK Wong, S Xiao, H Dai, Z Xiang, M Ma, Y Xiong, Z Zhang, L Zhang, X Song, F Wang, X Mu, J Li, H Ma, Y Zhang, H Zheng, O Simakov, Z Yu
Nature Ecology & Evolution 2021
Viruses infecting a warm water picoeukaryote shed light on spatial co-occurrence dynamics of marine viruses and their hosts
C Bachy, CC Yung, DM Needham, MC Gazitúa, S Roux, AJ Limardo, CJ Choi, DM Jorgens, MB Sullivan, AZ Worden
The ISME Journal 2021
Peteryoungia gen. nov. with four new species combinations and description of Peteryoungia desertarenae sp. nov., and taxonomic revision of the genus Ciceribacter based on phylogenomics of Rhizobiaceae
P Rahi, M Khairnar, A Hagir, A Narayan, KR Jain, D Madamwar, A Pansare, Y Shouche
Archives of Microbiology 2021
Population genomics provides insights into the evolution and adaptation to humans of the waterborne pathogen Mycobacterium kansasii
T Luo, P Xu, Y Zhang, JL Porter, M Ghanem, Q Liu, Y Jiang, J Li, Q Miao, B Hu, BP Howden, JA Fyfe, M Globan, W He, P He, Y Wang, H Liu, HE Takiff, Y Zhao, X Chen, Q Pan, MA Behr, TP Stinear, Q Gao
Nature Communications 2021
Root Digger: a root placement program for phylogenetic trees
B Bettisworth, A Stamatakis
BMC bioinformatics 2021
Integration of early disease-resistance phenotyping, histological characterization, and transcriptome sequencing reveals insights into downy mildew resistance in impatiens
Z Peng, Y He, S Parajuli, Q You, W Wang, K Bhattarai, AJ Palmateer, Z Deng
Horticulture Research 2021
Whole-genome resequencing of Osmanthus fragrans provides insights into flower color evolution
H Chen, X Zeng, J Yang, X Cai, Y Shi, R Zheng, Z Wang, J Liu, X Yi, S Xiao, Q Fu, J Zou, C Wang
Horticulture Research 2021
Chromosome-scale assembly and analysis of biomass crop Miscanthus lutarioriparius genome
J Miao, Q Feng, Y Li, Q Zhao, C Zhou, H Lu, D Fan, J Yan, Y Lu, Q Tian, W Li, Q Weng, L Zhang, Y Zhao, T Huang, L Li, X Huang, T Sang, B Han
Nature Communications 2021
Plasmodium vinckei genomes provide insights into the pan-genome and evolution of rodent malaria parasites
A Ramaprasad, S Klaus, O Douvropoulou, R Culleton, A Pain
BMC Biology 2021
A robust phylogenetic framework for members of the order Legionellales and its main genera (Legionella, Aquicella, Coxiella and Rickettsiella) based on phylogenomic analyses and identification of molecular markers demarcating different clades
N Saini, RS Gupta
Antonie van Leeuwenhoek 2021
Description of Nocardioides piscis sp. nov., Sphingomonas piscis sp. nov. and Sphingomonas sinipercae sp. nov., isolated from the intestine of fish species Odontobutis interrupta (Korean spotted sleeper) and Siniperca scherzeri (leopard mandarin fish)
DW Hyun, YS Jeong, JY Lee, H Sung, SY Lee, JW Choi, HS Kim, PS Kim, JW Bae
The Journal of Microbiology 2021
Large-scale sequencing of flatfish genomes provides insights into the polyphyletic origin of their specialized body plan
Z Lü, L Gong, Y Ren, Y Chen, Z Wang, L Liu, H Li, X Chen, Z Li, H Luo, H Jiang, Y Zeng, Y Wang, K Wang, C Zhang, H Jiang, W Wan, Y Qin, J Zhang, L Zhu, W Shi, S He, B Mao, W Wang, X Kong, Y Li
Nature Genetics 2021
Multi-omics analysis provides insights into lignocellulosic biomass degradation by Laetiporus sulphureus ATCC 52600
FL de Figueiredo, AC de Oliveira, CR Terrasan, TA Gonçalves, JA Gerhardt, G Tomazetto, GF Persinoti, MV Rubio, JA Peña, MF Araújo, MA de Carvalho Silvello, TT Franco, SC Rabelo, R Goldbeck, FM Squina, A Damasio
Biotechnology for Biofuels 2021
Population and subspecies diversity at mouse centromere satellites
UP Arora, C Charlebois, RA Lawal, BL Dumont
BMC Genomics 2021
Genome sequencing and comparative genomic analysis of highly and weakly aggressive strains of Sclerotium rolfsii, the causal agent of peanut stem rot
L Yan, Z Wang, W Song, P Fan, Y Kang, Y Lei, L Wan, D Huai, Y Chen, X Wang, H Sudini, B Liao
BMC Genomics 2021
Addressing widespread misidentifications of traditional medicinal mushrooms in Sanghuangporus (Basidiomycota) through ITS barcoding and designation of reference sequences
S Shen, SL Liu, JH Jiang, LW Zhou
IMA Fungus 2021
Genetic diversity and population structure of razor clam Sinonovacula constricta in Ariake Bay, Japan, revealed using RAD-Seq SNP markers
R Orita, Y Nagano, Y Kawamura, K Kimura, G Kobayashi
Scientific Reports 2021
Multiple concurrent and convergent stages of genome reduction in bacterial symbionts across a stink bug family
A Otero-Bravo, ZL Sabree
Scientific Reports 2021
Species composition and infection levels of Anisakis (Nematoda: Anisakidae) in the skipjack tuna Katsuwonus pelamis (Linnaeus) in the Northwest Pacific
T Takano, T Iwaki, T Waki, R Murata, J Suzuki, Y Kodo, K Kobayashi, K Ogawa
Parasitology Research 2021
Unexpected genomic, biosynthetic and species diversity of Streptomyces bacteria from bats in Arizona and New Mexico, USA
CJ Park, NA Caimi, DC Buecher, EW Valdez, DE Northup, CP Andam
BMC Genomics 2021
Genome-based classification of the Streptomyces violaceusniger clade and description of Streptomyces sabulosicollis sp. nov. from an Indonesian sand dune
AB Kusuma, I Nouioui, M Goodfellow
Antonie van Leeuwenhoek 2021
Pactacin is a novel digestive enzyme in teleosts
M Kawaguchi, Y Okazawa, A Imafuku, Y Nakano, R Shimizu, R Ishizuka, T Jiang, T Nagasawa, J Hiroi, S Yasumasu
Scientific Reports 2021
Genome of a citrus rootstock and global DNA demethylation caused by heterografting
Y Huang, Y Xu, X Jiang, H Yu, H Jia, C Tan, G Hu, Y Hu, MJ Rao, X Deng, Q Xu
Horticulture Research 2021
Genomic analysis uncovers functional variation in the C-terminus of anthocyanin-activating MYB transcription factors
JA Rodrigues, RV Espley, AC Allan
Horticulture Research 2021
Global phylogeography of a pantropical mangrove genus Rhizophora
K Takayama, Y Tateishi, T Kajita
Scientific Reports 2021
The metabolic network of the last bacterial common ancestor
JC Xavier, RE Gerhards, JL Wimmer, J Brueckner, FD Tria, WF Martin
2021
Comparative in silico genome analysis of Clostridium perfringens unravels stable phylogroups with different genome characteristics and pathogenic potential
MY Abdel-Glil, P Thomas, J Linde, A Busch, LH Wieler, H Neubauer, C Seyboldt
Scientific Reports 2021
Additional description and genome analyses of Caenorhabditis auriculariae representing the basal lineage of genus Caenorhabditis
M Dayi, N Kanzaki, S Sun, T Ide, R Tanaka, H Masuya, K Okabe, H Kajimura, T Kikuchi
Scientific Reports 2021
The phylogeographic history of Krascheninnikovia reflects the development of dry steppes and semi-deserts in Eurasia
A Seidl, K Tremetsberger, S Pfanzelt, FR Blattner, B Neuffer, N Friesen, H Hurka, A Shmakov, O Batlai, AŽ Čalasan, PV Vesselova, KG Bernhardt
Scientific Reports 2021
WOODIV, a database of occurrences, functional traits, and phylogenetic data for all Euro-Mediterranean trees
AC Monnet, K Cilleros, F Médail, MC Albassatneh, J Arroyo, G Bacchetta, F Bagnoli, Z Barina, M Cartereau, N Casajus, P Dimopoulos, G Domina, A Doxa, M Escudero, B Fady, A Hampe, V Matevski, S Misfud, T Nikolic, D Pavon, A Roig, ES Barea, I Spanu, A Strid, GG Vendramin, A Leriche
Scientific Data 2021
Comparison of Brassica Genomes reveals asymmetrical gene retention between functional groups of genes in recurrent polyploidizations
H Zhang, J Xie, W Wang, J Wang
Plant Molecular Biology 2021
Evolutionary Rates are Correlated Between Buchnera Endosymbionts and the Mitochondrial Genomes of Their Aphid Hosts
DA Arab, N Lo
Journal of Molecular Evolution 2021
Genomics and transcriptomics of the green mussel explain the durability of its byssus
K Inoue, Y Yoshioka, H Tanaka, A Kinjo, M Sassa, I Ueda, C Shinzato, A Toyoda, T Itoh
Scientific Reports 2021
Paenibacillus glycinis sp. nov., an Endophytic Bacterium Isolated from the Nodules of Soybean (Glycine max (L.) Merr)
H Wang, D Hu, Z Wang, C Yang, S Zhu, C Gu, ET Wang
Current Microbiology 2021
Anaerobic endosymbiont generates energy for ciliate host by denitrification
JS Graf, S Schorn, K Kitzinger, S Ahmerkamp, C Woehle, B Huettel, CJ Schubert, MM Kuypers, J Milucka
Nature 2021
North American Fireflies Host Low Bacterial Diversity
EA Green, SR Smedley, JL Klassen
Microbial Ecology 2021
Environmental palaeogenomic reconstruction of an Ice Age algal population
Y Lammers, PD Heintzman, IG Alsos
2021
Draft genome of a novel methanotrophic Methylobacter sp. from the volcanic soils of Pantelleria Island
C Hogendoorn, N Picone, F van Hout, S Vijverberg, L Poghosyan, TA van Alen, J Frank, A Pol, AL Gagliano, MS Jetten, W DAlessandro, P Quatrini, HJ den Camp
Antonie van Leeuwenhoek 2021
Comparative genomics of a novel clade shed light on the evolution of the genus Erysipelothrix and characterise an emerging species
AL Grazziotin, NM Vidal, PG Hoepers, TF Reis, D Mesa, LF Caron, M Ingberman, BC Beirão, JP Zuffo, BB Fonseca
Scientific Reports 2021
Ancient mitogenomics elucidates diversity of extinct West Indian tortoises
C Kehlmaier, NA Albury, DW Steadman, E Graciá, R Franz, U Fritz
Scientific Reports 2021
Methodological synthesis of Bayesian phylodynamics, HIV-TRACE, and GEE: HIV-1 transmission epidemiology in a racially/ethnically diverse Southern U.S. context
K Fujimoto, J Bahl, JO Wertheim, ND Vecchio, JT Hicks, L Damodaran, CJ Hallmark, R Lavingia, R Mora, M Carr, B Yang, JA Schneider, LY Hwang, M McNeese
Scientific Reports 2021
Ophiocordyceps salganeicola, a parasite of social cockroaches in Japan and insights into the evolution of other closely-related Blattodea-associated lineages
JP Araújo, MG Moriguchi, S Uchiyama, N Kinjo, Y Matsuura
IMA Fungus 2021
Evolution at two time frames: ancient structural variants involved in post-glacial divergence of the European plaice (Pleuronectes platessa)
AL Moan, D Bekkevold, J Hemmer-Hansen
Heredity 2021
Inferring historical survivals of climate relicts: the effects of climate changes, geography, and population-specific factors on herbaceous hydrangeas
S Sakaguchi, Y Asaoka, D Takahashi, Y Isagi, R Imai, AJ Nagano, YX Qiu, P Li, R Lu, H Setoguchi
Heredity 2021
Analysis of Rice Transcriptome Reveals the LncRNA/CircRNA Regulation in Tissue Development
R Zhou, P Sanz-Jimenez, , JW Feng, L Shao, JM Song, LL Chen
Rice (New York, N.y.) 2021
An atlas of CNV maps in cattle, goat and sheep
Y Huang, Y Li, X Wang, J Yu, Y Cai, Z Zheng, R Li, S Zhang, N Chen, HA Nanaei, Q Hanif, Q Chen, W Fu, C Li, X Cao, G Zhou, S Liu, S He, W Li, Y Chen, H Chen, C Lei, M Liu, Y Jiang
Science China Life Sciences 2021
Identifying the true number of specimens of the extinct blue antelope (Hippotragus leucophaeus)
E Hempel, F Bibi, JT Faith, JS Brink, DC Kalthoff, P Kamminga, JL Paijmans, MV Westbury, M Hofreiter, FE Zachos
Scientific Reports 2021
Transcriptomic analysis of s-methoprene resistance in the lesser grain borer, Rhyzopertha dominica, and evaluation of piperonyl butoxide as a resistance breaker
MK Sakka, M Riga, P Ioannidis, GV Baliota, M Tselika, R Jagadeesan, MK Nayak, J Vontas, CG Athanassiou
BMC Genomics 2021
Comparative mitogenome analyses uncover mitogenome features and phylogenetic implications of the subfamily Cobitinae
P Yu, L Zhou, WT Yang, L Miao, Z Li, XJ Zhang, Y Wang, JF Gui
BMC Genomics 2021
Uncovering dynamic evolution in the plastid genome of seven Ligusticum species provides insights into species discrimination and phylogenetic implications
C Yuan, X Sha, M Xiong, W Zhong, Y Wei, M Li, S Tao, F Mou, F Peng, C Zhang
Scientific Reports 2021
Signatures of conserved and unique molecular features in Afrotheria
A Yazhini, N Srinivasan, S Sandhya
Scientific Reports 2021
The pineapple MADS-box gene family and the evolution of early monocot flower
J Hu, X Chang, Y Zhang, X Yu, Y Qin, Y Sun, L Zhang
Scientific Reports 2021
Felsenstein Phylogenetic Likelihood
D Posada, KA Crandall
Journal of Molecular Evolution 2021
Combined whole cell wall analysis and streamlined in silico carbohydrate-active enzyme discovery to improve biocatalytic conversion of agricultural crop residues
JP Tingley, KE Low, X Xing, DW Abbott
Biotechnology for Biofuels 2021
Comparative analysis of chloroplast genomes indicated different origin for Indian tea (Camellia assamica cv TV1) as compared to Chinese tea
HC Rawal, S Borchetia, B Bera, S Soundararajan, RV Ilango, AK Barooah, TR Sharma, NK Singh, TK Mondal
Scientific Reports 2021
Evolutionary relationships of Metchnikovella dogieli Paskerova et al., 2016 (Microsporidia: Metchnikovellidae) revealed by multigene phylogenetic analysis
ES Nassonova, NI Bondarenko, GG Paskerova, M Kováčiková, EV Frolova, AV Smirnov
Parasitology Research 2021
Diversity and phylogeny of Paradiplozoon species (Monogenea: Diplozoidae) parasitising endemic cyprinoids in the peri-Mediterranean area, with a description of three new Paradiplozoon species
M Benovics, B Koubková, K Civáňová, I Rahmouni, K Čermáková, A Šimková
Parasitology Research 2021
Platypus and echidna genomes reveal mammalian biology and evolution
Y Zhou, L Shearwin-Whyatt, J Li, Z Song, T Hayakawa, D Stevens, JC Fenelon, E Peel, Y Cheng, F Pajpach, N Bradley, H Suzuki, M Nikaido, J Damas, T Daish, T Perry, Z Zhu, Y Geng, A Rhie, Y Sims, J Wood, B Haase, J Mountcastle, O Fedrigo, Q Li, H Yang, J Wang, SD Johnston, AM Phillippy, K Howe, ED Jarvis, OA Ryder, H Kaessmann, P Donnelly, J Korlach, HA Lewin, J Graves, K Belov, MB Renfree, F Grutzner, Q Zhou, G Zhang
Nature 2021
Dinoflagellates alter their carbon and nutrient metabolic strategies across environmental gradients in the central Pacific Ocean
NR Cohen, MR McIlvin, DM Moran, NA Held, JK Saunders, NJ Hawco, M Brosnahan, GR DiTullio, C Lamborg, JP McCrow, CL Dupont, AE Allen, MA Saito
Nature Microbiology 2021
Temperature modulates stress response in mainstream anammox reactors
R Niederdorfer, D Hausherr, A Palomo, J Wei, P Magyar, BF Smets, A Joss, H Bürgmann
2021
The First Report for the Presence of Spiroplasma and Rickettsia in Red Palm Weevil Rhynchophorus ferrugineus (Coleoptera: Curculionidae) in Egypt
M Awad, A Sharaf, TA Elrahman, HM El-Saadany, OA ElKraly, SM Elnagdy
Acta Parasitologica 2021
Molecular epidemiology of extended-spectrum beta-lactamase–producing extra-intestinal pathogenic Escherichia coli strains over a 2-year period (2017–2019) from Zimbabwe
FT Takawira, JD Pitout, G Thilliez, T Mashe, AV Gutierrez, RA Kingsley, G Peirano, J Matheu, SM Midzi, LW Mwamakamba, DL Gally, A Tarupiwa, L Mukavhi, MM Ehlers, S Mtapuri-Zinyowera, MM Kock
European Journal of Clinical Microbiology & Infectious Diseases 2021
Evolutionary genomics of APSE: a tailed phage that lysogenically converts the bacterium Hamiltonella defensa into a heritable protective symbiont of aphids
BM Boyd, G Chevignon, V Patel, KM Oliver, MR Strand
Virology Journal 2021
Expression analyses in Ginkgo biloba provide new insights into the evolution and development of the seed
C Zumajo-Cardona, DP Little, D Stevenson, BA Ambrose
Scientific Reports 2021
Cohnella cholangitidis sp. nov., a novel species of the genus Cohnella isolated from a clinical specimen in Korea
JK Kim, CH Choi, DW Kim, SY Kim, KJ Hwang, WK Lee, MK Shin, M Jung, YS Choi
Archives of Microbiology 2021
Cryptococcus depauperatus, a close relative of the human-pathogen C. neoformans, associated with coffee leaf rust (Hemileia vastatrix) in Cameroon
DC Guterres, MK Ndacnou, LM Saavedra-Tobar, S Salcedo-Sarmiento, AA Colmán, HC Evans, RW Barreto
Brazilian Journal of Microbiology 2021
Roles of three putative salmon louse (Lepeophtheirus salmonis) prostaglandin E2 synthases in physiology and host–parasite interactions
S Dalvin, C Eichner, M Dondrup, AC Øvergård
Parasites & vectors 2021
Listeria monocytogenes faecal carriage is common and depends on the gut microbiota
L Hafner, M Pichon, C Burucoa, SH Nusser, A Moura, M Garcia-Garcera, M Lecuit
Nature Communications 2021
The ties of brotherhood between japonica and indica rice for regional adaptation
M Wang, J Chen, F Zhou, J Yuan, L Chen, R Wu, Y Liu, Q Zhang
Science China Life Sciences 2021
The emergence, genomic diversity and global spread of SARS-CoV-2
J Li, S Lai, GF Gao, W Shi
Nature 2021
Diversification of ergot alkaloids and heritable fungal symbionts in morning glories
WT Beaulieu, DG Panaccione, QN Quach, KL Smoot, K Clay
2021
Phylogeographic pattern of a cryptoviviparous mangrove, Aegiceras corniculatum, in the Indo-West Pacific, provides insights for conservation actions
AK Banerjee, H Feng, Y Lin, Z Hou, W Li, H Shao, Z Luo, W Guo, Y Huang
Planta 2021
The genome of the diatom Chaetoceros tenuissimus carries an ancient integrated fragment of an extant virus
Y Hongo, K Kimura, Y Takaki, Y Yoshida, S Baba, G Kobayashi, K Nagasaki, T Hano, Y Tomaru
Scientific Reports 2021
Protein innovation through template switching in the Saccharomyces cerevisiae lineage
M Abraham, E Hazkani-Covo
Scientific Reports 2021
Phylogenetic and Ancestral Sequence Reconstruction of SARS-CoV-2 Reveals Latent Capacity to Bind Human ACE2 Receptor
E Brintnell, M Gupta, DW Anderson
Journal of Molecular Evolution 2021
Iron and sulfate reduction structure microbial communities in (sub-)Antarctic sediments
LC Wunder, DA Aromokeye, X Yin, T Richter-Heitmann, G Willis-Poratti, A Schnakenberg, C Otersen, I Dohrmann, M Römer, G Bohrmann, S Kasten, MW Friedrich
The ISME Journal 2021
Evolution of the cytochrome bd oxygen reductase superfamily and the function of CydAA’ in Archaea
R Murali, RB Gennis, J Hemp
The ISME Journal 2021
Novel clades of soil biphenyl degraders revealed by integrating isotope probing, multi-omics, and single-cell analyses
SC Chen, R Budhraja, L Adrian, F Calabrese, H Stryhanyuk, N Musat, HH Richnow, GL Duan, YG Zhu, F Musat
The ISME Journal 2021
Molecular Identification of Plerocercoids of Clistobothrium montaukensis (Cestoda: Phyllobothriidea) Parasitizing the King of Herrings Regalecus glesne
H Lozano-Cobo, M del Carmen Gómez del Prado-Rosas, CA Silva-Segundo, A Oceguera-Figueroa, J Gómez-Gutiérrez
Acta Parasitologica 2021
Lineage-specific energy and carbon metabolism of sponge symbionts and contributions to the host carbon pool.
Burgsdorf I, Sizikov S, Squatrito V, Britstein M, Slaby BM, Cerrano C, Handley KM, Steindler L
The ISME Journal 2021
Convergent evolution of bacterial ceramide synthesis.
Stankeviciute G, Tang P, Ashley B, Chamberlain JD, Hansen MEB, Coleman A, D'Emilia R, Fu L, Mohan EC, Nguyen H, Guan Z, Campopiano DJ, Klein EA
Nature Chemical Biology 2021
Analysis of Perioperative Risk Factors for Clostridium difficile Infection After a Colectomy.
Kong K, Soliman SS, Rolandelli RH, Elander MJ, Flanagan J, Hakakian D, Nemeth ZH
Cureus 2021
Unexpected myriad of co-occurring viral strains and species in one of the most abundant and microdiverse viruses on Earth.
Martinez-Hernandez F, Diop A, Garcia-Heredia I, Bobay LM, Martinez-Garcia M
The ISME Journal 2021
The Edible Plant Microbiome represents a diverse genetic reservoir with functional potential in the human host.
Soto-Giron MJ, Kim JN, Schott E, Tahmin C, Ishoey T, Mincer TJ, DeWalt J, Toledo G
Scientific Reports 2021
Gammarinema scyllae sp. n. and Monhystrium mangrovi sp. n. (Nematoda: Monhysteridae) from land crabs from New Caledonia.
Westerman R, Ahmed M, Holovachov O
Systematic Parasitology 2021
A species-level timeline of mammal evolution integrating phylogenomic data.
Álvarez-Carretero S, Tamuri AU, Battini M, Nascimento FF, Carlisle E, Asher RJ, Yang Z, Donoghue PCJ, Dos Reis M
Nature 2021
Variation and transmission of the human gut microbiota across multiple familial generations.
Valles-Colomer M, Bacigalupe R, Vieira-Silva S, Suzuki S, Darzi Y, Tito RY, Yamada T, Segata N, Raes J, Falony G
Nature Microbiology 2021
Adaptation to the cervical environment is associated with increased antibiotic susceptibility in Neisseria gonorrhoeae
KC Ma, TD Mortimer, AL Hicks, NE Wheeler, L Sánchez-Busó, D Golparian, G Taiaroa, DH Rubin, Y Wang, DA Williamson, M Unemo, SR Harris, YH Grad
Nature Communications 2020
Alterations in the Gut Microbiome and Cecal Metabolome During Klebsiella pneumoniae-Induced Pneumosepsis
T Wu, F Xu, C Su, H Li, N Lv, Y Liu, Y Gao, Y Lan, J Li
Frontiers in immunology 2020
Microbiota-Derived Short-Chain Fatty Acids Promote LAMTOR2-Mediated Immune Responses in Macrophages
T Wu, H Li, C Su, F Xu, G Yang, K Sun, M Xu, N Lv, B Meng, Y Liu, L Hu, Y Liu, Y Gao, H Wang, Y Lan, D Xu, J Li, PJ Turnbaugh
mSystems 2020
Microbial communities modulating brain functioning and behaviors in zebrafish: A mechanistic approach
L Mohanta, BC Das, M Patri
Microbial Pathogenesis 2020
NRF2/ACSS2 axis mediates the metabolic effect of alcohol drinking on esophageal squamous cell carcinoma
JO Odera, Z Xiong, C Huang, N Gu, W Yang, J Githang'a, E Odera, C Paiboonrungruang, X Chen
Biochemical Journal 2020
The Alcohol–High-Density Lipoprotein Athero-Protective Axis
C Rosales, BK Gillard, AM Gotto, HJ Pownall
Biomolecules 2020
Microbiota and cancer: host cellular mechanisms activated by gut microbial metabolites
SA Tsvetikova, EI Koshel
International journal of medical microbiology : IJMM 2020
Associations of gut microbiota, dietary intake, and serum short-chain fatty acids with fecal short-chain fatty acids
R YAMAMURA, K NAKAMURA, N KITADA, T AIZAWA, Y SHIMIZU, K NAKAMURA, T AYABE, T KIMURA, A TAMAKOSHI
Bioscience of Microbiota, Food and Health 2020
Short-chain fatty acid mitigates adenine-induced chronic kidney disease via FFA2 and FFA3 pathways
D Mikami, M Kobayashi, J Uwada, T Yazawa, K Kamiyama, K Nishimori, Y Nishikawa, S Nishikawa, S Yokoi, H Kimura, I Kimura, T Taniguchi, M Iwano
Biochimica et Biophysica Acta (BBA) - Molecular and Cell Biology of Lipids 2020
Lactobacillus salivarius BP121 prevents cisplatin‑induced acute kidney injury by inhibition of uremic toxins such as indoxyl sulfate and p‑cresol sulfate via alleviating dysbiosis
TH Lee, D Park, Y Kim, I Lee, S Kim, CT Oh, JY Kim, J Yang, SK Jo
International journal of molecular medicine 2020
Gut Microbiota of Wild and Captive Alpine Musk Deer (Moschus chrysogaster)
Y Sun, Y Sun, Z Shi, Z Liu, C Zhao, T Lu, H Gao, F Zhu, R Chen, J Zhang, R Pan, B Li, L Teng, S Guo
Frontiers in microbiology 2020
Alcohol metabolite acetic acid activates BK channels in a pH-dependent manner and decreases calcium oscillations and exocytosis of secretory granules in rat pituitary GH3 cells
I Shaidullov, E Ermakova, A Gaifullina, A Mosshammer, A Yakovlev, TM Weiger, A Hermann, G Sitdikova
Pflügers Archiv - European Journal of Physiology 2020
Effects of prebiotic consumption on serum intestinal fatty acid‐binding protein levels in patients with diabetes: A case‐control study
YC Hou, CW Lai, CF Cheng, YY Lin, TH Hsieh, JH Wu, IS Tzeng, CY Kuo
Journal of Clinical Laboratory Analysis 2020
From landrace to modern hybrid broccoli: the genomic and morphological domestication syndrome within a diverse B. oleracea collection
Z Stansell, T Björkman
Horticulture Research 2020
A high-quality chromosome-level genome assembly reveals genetics for important traits in eggplant
Q Wei, J Wang, W Wang, T Hu, H Hu, C Bao
Horticulture Research 2020
Transcriptome analysis and metabolic profiling reveal the key role of carotenoids in the petal coloration of Liriodendron tulipifera
Z Hao, S Liu, L Hu, J Shi, J Chen
Horticulture Research 2020
Genome-centric resolution of novel microbial lineages in an excavated Centrosaurus dinosaur fossil bone from the Late Cretaceous of North America
R Liang, MC Lau, ET Saitta, ZK Garvin, TC Onstott
2020
Description of Vagococcus coleopterorum sp. nov., isolated from the intestine of the diving beetle, Cybister lewisianus, and Vagococcus hydrophili sp. nov., isolated from the intestine of the dark diving beetle, Hydrophilus acuminatus, and emended description of the genus Vagococcus
DW Hyun, EJ Tak, PS Kim, JW Bae
The Journal of Microbiology 2020
Phylogenetic structure of Salmonella Enteritidis provides context for a foodborne outbreak in Peru
W Quino, J Caro-Castro, O Mestanza, CV Hurtado, ML Zamudio, RG Gavilan
Scientific Reports 2020
A chromosome-scale reference genome of Lobularia maritima, an ornamental plant with high stress tolerance
L Huang, Y Ma, J Jiang, T Li, W Yang, L Zhang, L Wu, L Feng, , X Xu, J Liu, Q Hu
Horticulture Research 2020
Genome-wide genetic variation coupled with demographic and ecological niche modeling of the dusky-footed woodrat (Neotoma fuscipes) reveal patterns of deep divergence and widespread Holocene expansion across northern California
RA Boria, SK Brown, MD Matocq, JL Blois
Heredity 2020
Three redescriptions in Tintinnopsis (Protista: Ciliophora: Tintinnina) from coastal waters of China, with cytology and phylogenetic analyses based on ribosomal RNA genes
Y Bai, R Wang, W Song, L Li, LF Santoferrara, X Hu
BMC Microbiology 2020
Molecular Plant Taxonomy: Methods and Protocols
P Besse
2020
Mutation of hilD in a Salmonella Derby lineage linked to swine adaptation and reduced risk to human health
M Tambassi, M Berni, C Bracchi, E Scaltriti, M Morganti, L Bolzoni, JR Tanner, G Thilliez, RA Kingsley, S Pongolini, G Casadei
Scientific Reports 2020
Naming the untouchable – environmental sequences and niche partitioning as taxonomical evidence in fungi
FK Khan, K Kluting, J Tångrot, H Urbina, T Ammunet, SE Sahraei, M Rydén, M Ryberg, A Rosling
IMA Fungus 2020
Drivers and dynamics of a massive adaptive radiation in cichlid fishes
F Ronco, M Matschiner, A Böhne, A Boila, HH Büscher, AE Taher, A Indermaur, M Malinsky, V Ricci, A Kahmen, S Jentoft, W Salzburger
Nature 2020
Enrichment and physiological characterization of a novel comammox Nitrospira indicates ammonium inhibition of complete nitrification
D Sakoula, H Koch, J Frank, MS Jetten, MA van Kessel, S Lücker
The ISME Journal 2020
Contrasting signatures of genomic divergence during sympatric speciation
AF Kautt, CF Kratochwil, A Nater, G Machado-Schiaffino, M Olave, F Henning, J Torres-Dowdall, A Härer, CD Hulsey, P Franchini, M Pippel, EW Myers, A Meyer
Nature 2020
Host-symbiont coevolution, cryptic structure, and bleaching susceptibility, in a coral species complex (Scleractinia; Poritidae)
ZH Forsman, R Ritson-Williams, KH Tisthammer, IS Knapp, RJ Toonen
Scientific Reports 2020
Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits
S Miyauchi, E Kiss, A Kuo, E Drula, A Kohler, M Sánchez-García, E Morin, B Andreopoulos, KW Barry, G Bonito, M Buée, A Carver, C Chen, N Cichocki, A Clum, D Culley, PW Crous, L Fauchery, M Girlanda, RD Hayes, Z Kéri, K LaButti, A Lipzen, V Lombard, J Magnuson, F Maillard, C Murat, M Nolan, RA Ohm, J Pangilinan, M de Freitas Pereira, S Perotto, M Peter, S Pfister, R Riley, Y Sitrit, JB Stielow, G Szöllősi, L Žifčáková, M Štursová, JW Spatafora, L Tedersoo, LM Vaario, A Yamada, M Yan, P Wang, J Xu, T Bruns, P Baldrian, R Vilgalys, C Dunand, B Henrissat, IV Grigoriev, D Hibbett, LG Nagy, FM Martin
Nature Communications 2020
A unique clade of light-driven proton-pumping rhodopsins evolved in the cyanobacterial lineage
M Hasegawa, T Hosaka, K Kojima, Y Nishimura, Y Nakajima, T Kimura-Someya, M Shirouzu, Y Sudo, S Yoshizawa
Scientific Reports 2020
Marinomyxa Gen. Nov. Accommodates Gall-Forming Parasites of the Tropical to Subtropical Seagrass Genus Halophila and Constitutes a Novel Deep-Branching Lineage Within Phytomyxea (Rhizaria: Endomyxa)
V Kolátková, I Čepička, R Hoffman, M Vohník
Microbial Ecology 2020
A genome resource for green millet Setaria viridis enables discovery of agronomically valuable loci
S Mamidi, A Healey, P Huang, J Grimwood, J Jenkins, K Barry, A Sreedasyam, S Shu, JT Lovell, M Feldman, J Wu, Y Yu, C Chen, J Johnson, H Sakakibara, T Kiba, T Sakurai, R Tavares, DA Nusinow, I Baxter, J Schmutz, TP Brutnell, EA Kellogg
Nature Biotechnology 2020
The complete mitochondrial genome of medicinal fungus Taiwanofungus camphoratus reveals gene rearrangements and intron dynamics of Polyporales
X Wang, L Jia, M Wang, H Yang, M Chen, X Li, H Liu, Q Li, N Liu
Scientific Reports 2020
The Effects of Ecological Traits on the Rate of Molecular Evolution in Ray-Finned Fishes: A Multivariable Approach
JA May, Z Feng, MG Orton, SJ Adamowicz
Journal of Molecular Evolution 2020
Myanmar Burkholderia pseudomallei strains are genetically diverse and originate from Asia with phylogenetic evidence of reintroductions from neighbouring countries
JR Webb, MM Win, KN Zin, KK Win, TT Wah, EA Ashley, F Smithuis, MM Swe, M Mayo, BJ Currie, DA Dance
Scientific Reports 2020
Aenigmachannidae, a new family of snakehead fishes (Teleostei: Channoidei) from subterranean waters of South India
R Britz, N Dahanukar, VK Anoop, S Philip, B Clark, R Raghavan, L Rüber
Scientific Reports 2020
A symbiotic nutrient exchange within the cyanosphere microbiome of the biocrust cyanobacterium, Microcoleus vaginatus
C Nelson, A Giraldo-Silva, F Garcia-Pichel
The ISME Journal 2020
Outbreak of multi-drug-resistant (MDR) Shigella flexneri in northern Australia due to an endemic regional clone acquiring an IncFII plasmid
CJ Guglielmino, A Kakkanat, BM Forde, S Rubenach, L Merone, R Stafford, RM Graham, SA Beatson, AV Jennison
European Journal of Clinical Microbiology & Infectious Diseases 2020
Analysis of muntjac deer genome and chromatin architecture reveals rapid karyotype evolution
AB Mudd, JV Bredeson, R Baum, D Hockemeyer, DS Rokhsar
2020
An ancient tropical origin, dispersals via land bridges and Miocene diversification explain the subcosmopolitan disjunctions of the liverwort genus Lejeunea
GE Lee, FL Condamine, J Bechteler, OA Pérez-Escobar, A Scheben, A Schäfer-Verwimp, T Pócs, J Heinrichs
Scientific Reports 2020
The population genetics of pathogenic Escherichia coli
E Denamur, O Clermont, S Bonacorsi, D Gordon
Nature Reviews Microbiology 2020
The P-glycoprotein repertoire of the equine parasitic nematode Parascaris univalens
AP Gerhard, J Krücken, E Heitlinger, IJ Janssen, M Basiaga, S Kornaś, C Beier, MK Nielsen, RE Davis, J Wang, G von Samson-Himmelstjerna
Scientific Reports 2020
Genomic analyses of a livestock pest, the New World screwworm, find potential targets for genetic control programs
MJ Scott, JB Benoit, RJ Davis, ST Bailey, V Varga, EO Martinson, PV Hickner, Z Syed, GA Cardoso, TT Torres, MT Weirauch, EH Scholl, AM Phillippy, A Sagel, M Vasquez, G Quintero, SR Skoda
2020
Evolutionary origins of the SARS-CoV-2 sarbecovirus lineage responsible for the COVID-19 pandemic
MF Boni, P Lemey, X Jiang, TT Lam, BW Perry, TA Castoe, A Rambaut, DL Robertson
Nature Microbiology 2020
Genomic insights of body plan transitions from bilateral to pentameral symmetry in Echinoderms
Y Li, A Omori, RL Flores, S Satterfield, C Nguyen, T Ota, T Tsurugaya, T Ikuta, K Ikeo, M Kikuchi, JC Leong, A Reich, M Hao, W Wan, Y Dong, Y Ren, S Zhang, T Zeng, M Uesaka, Y Uchida, X Li, TF Shibata, T Bino, K Ogawa, S Shigenobu, M Kondo, F Wang, L Chen, G Wessel, H Saiga, RA Cameron, B Livingston, C Bradham, W Wang, N Irie
2020
Evolutionary and phylogenetic aspects of the chloroplast genome of Chaenomeles species
J Sun, Y Wang, Y Liu, C Xu, Q Yuan, L Guo, L Huang
Scientific Reports 2020
Mandarin fish (Sinipercidae) genomes provide insights into innate predatory feeding
S He, L Li, LY Lv, WJ Cai, YQ Dou, J Li, SL Tang, X Chen, Z Zhang, J Xu, YP Zhang, Z Yin, S Wuertz, YX Tao, H Kuhl, XF Liang
2020
Identification and characterization of Colletotrichum species causing apple bitter rot in New York and description of C. noveboracense sp. nov
F Khodadadi, JB González, PL Martin, E Giroux, GJ Bilodeau, KA Peter, VP Doyle, SG Aćimović
Scientific Reports 2020
Recent accelerated diversification in rosids occurred outside the tropics
M Sun, RA Folk, MA Gitzendanner, PS Soltis, Z Chen, DE Soltis, RP Guralnick
Nature Communications 2020
Subtyping analysis reveals new variants and accelerated evolution of Clostridioides difficile toxin B
E Shen, K Zhu, D Li, Z Pan, Y Luo, Q Bian, L He, X Song, Y Zhen, D Jin, L Tao
2020
Methane, arsenic, selenium and the origins of the DMSO reductase family
M Wells, NJ Kanmanii, AM Zadjali, JE Janecka, P Basu, RS Oremland, JF Stolz
Scientific Reports 2020
Does the Gonostomum-patterned oral apparatus in hypotrichia carry a phylogenetic signal? Evidence from morphological and molecular data based on extended taxon sampling using three nuclear genes (Ciliophora, Spirotrichea)
J Wang, Y Zhao, X Lu, Z Lyu, A Warren, C Shao
Science China Life Sciences 2020
An integrative DNA barcoding framework of ladybird beetles (Coleoptera: Coccinellidae)
W Huang, X Xie, L Huo, X Liang, X Wang, X Chen
Scientific Reports 2020
Recurrent horizontal transfer identifies mitochondrial positive selection in a transmissible cancer
A Strakova, TJ Nicholls, A Baez-Ortega, MN Leathlobhair, AT Sampson, K Hughes, IA Bolton, K Gori, J Wang, I Airikkala-Otter, JL Allen, KM Allum, CL Arnold, L Bansse-Issa, TN Bhutia, JL Bisson, K Blank, C Briceño, AC Domracheva, AM Corrigan, HR Cran, JT Crawford, SM Cutter, E Davis, KF de Castro, AB Nardi, AP de Vos, LD Keenan, EM Donelan, AR Huerta, IA Faramade, M Fazil, E Fotopoulou, SN Fruean, F Gallardo-Arrieta, O Glebova, PG Gouletsou, RF Manrique, JJ Henriques, RS Horta, N Ignatenko, Y Kane, C King, D Koenig, A Krupa, SJ Kruzeniski, M Lanza-Perea, M Lazyan, AM Quintana, T Losfelt, G Marino, SM Castañeda, MF Martínez-López, BM Masuruli, M Meyer, EJ Migneco, B Nakanwagi, KB Neal, W Neunzig, SJ Nixon, A Ortega-Pacheco, F Pedraza-Ordoñez, MC Peleteiro, K Polak, RJ Pye, JC Ramirez-Ante, JF Reece, JR Gutierrez, H Sadia, SK Schmeling, O Shamanova, AG Sherlock, AE Steenland-Smit, A Svitich, LJ Martínez, IT Ngoka, CG Torres, EM Tudor, MG van der Wel, BA Vițălaru, SA Vural, O Walkinton, AS Wehrle-Martinez, SA Widdowson, I Zvarich, PF Chinnery, M Falkenberg, CM Gustafsson, EP Murchison
Nature Communications 2020
Full-length transcript sequencing accelerates the transcriptome research of Gymnocypris namensis, an iconic fish of the Tibetan Plateau
H Luo, H Liu, J Zhang, B Hu, C Zhou, M Xiang, Y Yang, M Zhou, T Jing, Z Li, X Zhou, G Lv, W He, B Zeng, S Xiao, Q Li, H Ye
Scientific Reports 2020
Increasing incidence of group B streptococcus neonatal infections in the Netherlands is associated with clonal expansion of CC17 and CC23
D Jamrozy, MW Bijlsma, MC de Goffau, D van de Beek, TW Kuijpers, J Parkhill, A van der Ende, SD Bentley
Scientific Reports 2020
Faecal DNA to the rescue: Shotgun sequencing of non-invasive samples reveals two subspecies of Southeast Asian primates to be Critically Endangered species
A Ang, DI Roesma, V Nijman, R Meier, A Srivathsan, Rizaldi
Scientific Reports 2020
Patterns and Rates of Plastid rps12 Gene Evolution Inferred in a Phylogenetic Context using Plastomic Data of Ferns
S Liu, Z Wang, H Wang, Y Su, T Wang
Scientific Reports 2020
Comparative Gene Analysis Focused on Silica Cell Wall Formation: Identification of Diatom-Specific SET Domain Protein Methyltransferases
M Nemoto, S Iwaki, H Moriya, Y Monden, T Tamura, K Inagaki, S Mayama, K Obuse
Marine Biotechnology 2020
Integrating whole-genome sequencing within the National Antimicrobial Resistance Surveillance Program in the Philippines
S Argimón, MA Masim, JM Gayeta, ML Lagrada, PK Macaranas, V Cohen, MT Limas, HO Espiritu, JC Palarca, J Chilam, MC Jamoralin, AS Villamin, JB Borlasa, AM Olorosa, LF Hernandez, KD Boehme, B Jeffrey, K Abudahab, CM Hufano, SB Sia, J Stelling, MT Holden, DM Aanensen, CC Carlos
Nature Communications 2020
A novel cyanobacterial geosmin producer, revising GeoA distribution and dispersion patterns in Bacteria
C Churro, AP Semedo-Aguiar, AD Silva, JB Pereira-Leal, RB Leite
Scientific Reports 2020
Morphological, genotypic and metabolomic signatures confirm interfamilial hybridization between the ubiquitous kelps Macrocystis (Arthrothamnaceae) and Lessonia (Lessoniaceae)
P Murúa, RA Edrada-Ebel, L Muñoz, S Soldatou, N Legrave, DG Müller, DJ Patiño, P van West, FC Küpper, R Westermeier, R Ebel, AF Peters
Scientific Reports 2020
Allele-aware chromosome-level genome assembly and efficient transgene-free genome editing for the autotetraploid cultivated alfalfa
H Chen, Y Zeng, Y Yang, L Huang, B Tang, H Zhang, F Hao, W Liu, Y Li, Y Liu, X Zhang, R Zhang, Y Zhang, Y Li, K Wang, H He, Z Wang, G Fan, H Yang, A Bao, Z Shang, J Chen, W Wang, Q Qiu
Nature Communications 2020
Genome sequence of Gossypium herbaceum and genome updates of Gossypium arboreum and Gossypium hirsutum provide insights into cotton A-genome evolution
G Huang, Z Wu, RG Percy, M Bai, Y Li, JE Frelichowski, J Hu, K Wang, JZ Yu, Y Zhu
Nature Genetics 2020
The Litsea genome and the evolution of the laurel family
YC Chen, Z Li, YX Zhao, M Gao, JY Wang, KW Liu, X Wang, LW Wu, YL Jiao, ZL Xu, WG He, QY Zhang, CK Liang, YY Hsiao, DY Zhang, SR Lan, L Huang, W Xu, WC Tsai, ZJ Liu, YV de Peer, YD Wang
Nature Communications 2020
Stable species boundaries despite ten million years of hybridization in tropical eels
JM Barth, C Gubili, M Matschiner, OK Tørresen, S Watanabe, B Egger, YS Han, E Feunteun, R Sommaruga, R Jehle, R Schabetsberger
Nature Communications 2020
A high-quality genome sequence of alkaligrass provides insights into halophyte stress tolerance
W Zhang, J Liu, Y Zhang, J Qiu, Y Li, B Zheng, F Hu, S Dai, X Huang
Science China Life Sciences 2020
Phylogenomics of Rhodocyclales and its distribution in wastewater treatment systems
Z Wang, W Li, H Li, W Zheng, F Guo
Scientific Reports 2020
Hybridization and introgression drive genome evolution of Dutch elm disease pathogens
P Hessenauer, A Fijarczyk, H Martin, J Prunier, G Charron, J Chapuis, L Bernier, P Tanguay, RC Hamelin, CR Landry
Nature Ecology & Evolution 2020
Stem rust resistance in wheat is suppressed by a subunit of the mediator complex
CW Hiebert, MJ Moscou, T Hewitt, B Steuernagel, I Hernández-Pinzón, P Green, V Pujol, P Zhang, MN Rouse, Y Jin, RA McIntosh, N Upadhyaya, J Zhang, S Bhavani, J Vrána, M Karafiátová, L Huang, T Fetch, J Doležel, BB Wulff, E Lagudah, W Spielmeyer
Nature Communications 2020
Genome of Tripterygium wilfordii and identification of cytochrome P450 involved in triptolide biosynthesis
L Tu, P Su, Z Zhang, L Gao, J Wang, T Hu, J Zhou, Y Zhang, Y Zhao, Y Liu, Y Song, Y Tong, Y Lu, J Yang, C Xu, M Jia, RJ Peters, L Huang, W Gao
Nature Communications 2020
Response of the human gut and saliva microbiome to urbanization in Cameroon
A Lokmer, S Aflalo, N Amougou, S Lafosse, A Froment, FE Tabe, M Poyet, M Groussin, R Said-Mohamed, L Ségurel
Scientific Reports 2020
Rapid inference of antibiotic resistance and susceptibility by genomic neighbour typing
K Břinda, A Callendrello, KC Ma, DR MacFadden, T Charalampous, RS Lee, L Cowley, CB Wadsworth, YH Grad, G Kucherov, J OGrady, M Baym, WP Hanage
Nature Microbiology 2020
Statistical Population Genomics
JY Dutheil
2020
Phylogenetic informativeness analyses to clarify past diversification processes in Cucurbitaceae
S Bellot, TC Mitchell, H Schaefer
Scientific Reports 2020
Molecular characterisation of acanthocephalans from Australian marine teleosts: proposal of a new family, synonymy of another and transfer of taxa between orders
DC Huston, TH Cribb, LR Smales
Systematic Parasitology 2020
Evidence for phylogenetically and catabolically diverse active diazotrophs in deep-sea sediment
BJ Kapili, SE Barnett, DH Buckley, AE Dekas
The ISME Journal 2020
The gut-bone axis: How bacterial metabolites bridge the distance
Mario Zaiss, Rheinallt Jones, Georg Schett, Roberto Pacifici
Journal of Clinical Investigation 2019
Acetate Metabolism in Physiology, Cancer, and Beyond
S Bose, V Ramesh, JW Locasale
Trends in Cell Biology 2019
The Short-Chain Fatty Acid Acetate in Body Weight Control and Insulin Sensitivity
Hernández, Canfora, Jocken, Blaak
Nutrients 2019
Fecal short‐chain fatty acid concentrations and dysbiosis in dogs with chronic enteropathy
Y Minamoto, T Minamoto, A Isaiah, P Sattasathuchana, A Buono, VR Rangachari, IH McNeely, J Lidbury, JM Steiner, JS Suchodolski
Journal of Veterinary Internal Medicine 2019
Dietary fiber and its associations with depression and inflammation
OG Swann, M Kilpatrick, M Breslin, WH Oddy
Nutrition Reviews 2019
A beverage containing orange pomace improves laxation and modulates the microbiome in healthy adults: A randomised, blinded, controlled trial
JC Dennis-Wall, AM Burns, RJ Solch, M Ukhanova, WJ Dahl, MC Christman, T Boileau, M Brauchla, JE Shin, C Nieves, V Mai, B Langkamp-Henken
Journal of Functional Foods 2019
Characterization of the complete chloroplast genome sequence of Dalbergia species and its phylogenetic implications
Y Song, Y Zhang, J Xu, W Li, MF Li
Scientific Reports 2019
Tempo and mode of allopatric divergence in the weakly electric fish Sternopygus dariensis in the Isthmus of Panama
C Aguilar, MJ Miller, JR Loaiza, R González, R Krahe, LF León
Scientific Reports 2019
Phylogenomics provides robust support for a two-domains tree of life
TA Williams, CJ Cox, PG Foster, GJ Szöllősi, TM Embley
Nature Ecology & Evolution 2019
Stunted microbiota and opportunistic pathogen colonization in caesarean-section birth
Y Shao, SC Forster, E Tsaliki, K Vervier, A Strang, N Simpson, N Kumar, MD Stares, A Rodger, P Brocklehurst, N Field, TD Lawley
Nature 2019
Admixture between old lineages facilitated contemporary ecological speciation in Lake Constance stickleback
DA Marques, K Lucek, VC Sousa, L Excoffier, O Seehausen
Nature Communications 2019
The many faced symbiotic snakelocks anemone (Anemonia viridis, Anthozoa): host and symbiont genetic differentiation among colour morphs
B Porro, C Mallien, BC Hume, A Pey, E Aubin, R Christen, CR Voolstra, P Furla, D Forcioli
Heredity 2019
Genomic analysis on pygmy hog reveals extensive interbreeding during wild boar expansion
L Liu, M Bosse, HJ Megens, LA Frantz, YL Lee, EK Irving-Pease, G Narayan, MA Groenen, O Madsen
Nature Communications 2019
An automated Raman-based platform for the sorting of live cells by functional properties
KS Lee, M Palatinszky, FC Pereira, J Nguyen, VI Fernandez, AJ Mueller, F Menolascina, H Daims, D Berry, M Wagner, R Stocker
Nature Microbiology 2019
Carboxydotrophy potential of uncultivated Hydrothermarchaeota from the subseafloor crustal biosphere
SA Carr, SP Jungbluth, EA Eloe-Fadrosh, R Stepanauskas, T Woyke, MS Rappé, BN Orcutt
The ISME Journal 2019
Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation.
Thomas AM, Manghi P, Asnicar F, Pasolli E, Armanini F, Zolfo M, Beghini F, Manara S, Karcher N, Pozzi C, Gandini S, Serrano D, Tarallo S, Francavilla A, Gallo G, Trompetto M, Ferrero G, Mizutani S, Shiroma H, Shiba S, Shibata T, Yachida S, Yamada T, Wirbel J, Schrotz-King P, Ulrich CM, Brenner H, Arumugam M, Bork P, Zeller G, Cordero F, Dias-Neto E, Setubal JC, Tett A, Pardini B, Rescigno M, Waldron L, Naccarati A, Segata N
Nature Medicine 2019
Horizontal acquisition of a patchwork Calvin cycle by symbiotic and free-living Campylobacterota (formerly Epsilonproteobacteria).
Assié A, Leisch N, Meier DV, Gruber-Vodicka H, Tegetmeyer HE, Meyerdierks A, Kleiner M, Hinzke T, Joye S, Saxton M, Dubilier N, Petersen JM
The ISME Journal 2019
Extremophilic nitrite-oxidizing Chloroflexi from Yellowstone hot springs.
Spieck E, Spohn M, Wendt K, Bock E, Shively J, Frank J, Indenbirken D, Alawi M, Lücker S, Hüpeden J
The ISME Journal 2019
Puma genomes from North and South America provide insights into the genomic consequences of inbreeding.
Saremi NF, Supple MA, Byrne A, Cahill JA, Coutinho LL, Dalén L, Figueiró HV, Johnson WE, Milne HJ, O'Brien SJ, O'Connell B, Onorato DP, Riley SPD, Sikich JA, Stahler DR, Villela PMS, Vollmers C, Wayne RK, Eizirik E, Corbett-Detig RB, Green RE, Wilmers CC, Shapiro B
Nature Communications 2019
Marked changes in diversity and relative activity of picoeukaryotes with depth in the world ocean.
Giner CR, Pernice MC, Balagué V, Duarte CM, Gasol JM, Logares R, Massana R
The ISME Journal 2019
The architecture of the Plasmodiophora brassicae nuclear and mitochondrial genomes.
Stjelja S, Fogelqvist J, Tellgren-Roth C, Dixelius C
Scientific Reports 2019
Biodiversity of protists and nematodes in the wild nonhuman primate gut.
Mann AE, Mazel F, Lemay MA, Morien E, Billy V, Kowalewski M, Di Fiore A, Link A, Goldberg TL, Tecot S, Baden AL, Gomez A, Sauther ML, Cuozzo FP, Rice GAO, Dominy NJ, Stumpf R, Lewis RJ, Swedell L, Amato K, Wegener Parfrey L
The ISME Journal 2019
Interorgan Metabolic Crosstalk in Human Insulin Resistance
S Gancheva, T Jelenik, E Álvarez-Hernández, M Roden
Physiological reviews 2018
Intestinal dysbiosis activates renal renin-angiotensin system contributing to incipient diabetic nephropathy
CC Lu, KL Ma, XZ Ruan, BC Liu
International journal of medical sciences 2018
Bioengineered Systems and Designer Matrices That Recapitulate the Intestinal Stem Cell Niche
Y Wang, R Kim, SS Hinman, B Zwarycz, ST Magness, NL Allbritton
CMGH Cellular and Molecular Gastroenterology and Hepatology 2018
Review article: short chain fatty acids as potential therapeutic agents in human gastrointestinal and inflammatory disorders
PA Gill, MC van Zelm, JG Muir, PR Gibson
Alimentary Pharmacology & Therapeutics 2018
Beneficial effects of the commercial lactic acid bacteria product, Vigiis 101, on gastric mucosa and intestinal bacterial flora in rats
L Kao, TH Liu, TY Tsai, TM Pan
Journal of microbiology, immunology, and infection = Wei mian yu gan ran za zhi 2018
Current evidence linking diet to gut microbiota and brain development and function
F Ceppa, A Mancini, K Tuohy
International Journal of Food Sciences and Nutrition 2018
Validated Postbiotic Screening Confirms Presence of Physiologically-Active Metabolites, Such as Short-Chain Fatty Acids, Amino Acids and Vitamins in Hylak® Forte
S Patil, S Sawant, K Hauff, G Hampp
Probiotics and Antimicrobial Proteins 2018
Short chain fatty acids stimulate insulin secretion and reduce apoptosis in mouse and human islets in vitro: Role of free fatty acid receptor 2
A Pingitore, N Gonzalez-Abuin, I Ruz-Maldonado, GC Huang, G Frost, SJ Persaud
Diabetes, obesity & metabolism 2018
Current Status of Clostridium Difficile Infection
A Andoh, S Bamba
Nippon Daicho Komonbyo Gakkai Zasshi 2018
Study on the ability of partially hydrolyzed guar gum to modulate the gut microbiota and relieve constipation: XXXX
X Fu, R Li, T Zhang, M Li, H Mou
Journal of Food Biochemistry 2018
Phylogenetic imprint of woody plants on the soil mycobiome in natural mountain forests of eastern China
T Yang, L Tedersoo, PS Soltis, DE Soltis, JA Gilbert, M Sun, Y Shi, H Wang, Y Li, J Zhang, Z Chen, H Lin, Y Zhao, C Fu, H Chu
The ISME Journal 2018
Discovery of several novel, widespread, and ecologically distinct marine Thaumarchaeota viruses that encode amoC nitrification genes
NA Ahlgren, CA Fuchsman, G Rocap, JA Fuhrman
The ISME Journal 2018
Genomes of all known members of a Plasmodium subgenus reveal paths to virulent human malaria
TD Otto, A Gilabert, T Crellen, U Böhme, C Arnathau, M Sanders, SO Oyola, AP Okouga, L Boundenga, E Willaume, B Ngoubangoye, ND Moukodoum, C Paupy, P Durand, V Rougeron, B Ollomo, F Renaud, C Newbold, M Berriman, F Prugnolle
Nature Microbiology 2018
Genomic comparisons reveal biogeographic and anthropogenic impacts in the koala (Phascolarctos cinereus): a dietary-specialist species distributed across heterogeneous environments.
Kjeldsen SR, Raadsma HW, Leigh KA, Tobey JR, Phalen D, Krockenberger A, Ellis WA, Hynes E, Higgins DP, Zenger KR
Heredity 2018
Does the Gut Microbiota Influence Immunity and Inflammation in Multiple Sclerosis Pathophysiology?
M Adamczyk-Sowa, A Medrek, P Madej, W Michlicka, P Dobrakowski
Journal of Immunology Research 2017
Epigenetic Metabolite Acetate Inhibits Class I/II Histone Deacetylases, Promotes Histone Acetylation, and Increases HIV-1 Integration in CD4 + T Cells
JF Bolduc, L Hany, C Barat, M Ouellet, MJ Tremblay, G Silvestri
Journal of virology 2017
Towards an Integrative Understanding of Diet–Host–Gut Microbiome Interactions
MN Read, AJ Holmes
Frontiers in immunology 2017
Butyrate and propionate inhibit antigen-specific CD8+ T cell activation by suppressing IL-12 production by antigen-presenting cells
C Nastasi, S Fredholm, A Willerslev-Olsen, M Hansen, CM Bonefeld, C Geisler, MH Andersen, N Ødum, A Woetmann
Scientific Reports 2017
Gut microbiota–derived short-chain fatty acids and kidney diseases
L Li, L Ma, P Fu
Drug design, development and therapy 2017
Epigenetic Metabolite Acetate Inhibits Class I/II Histone Deacetylases, Promotes Histone Acetylation, and Increases HIV-1 Integration in CD4 + T Cells
JF Bolduc, L Hany, C Barat, M Ouellet, MJ Tremblay, G Silvestri
Journal of virology 2017
Gut microbiota in the pathogenesis of inflammatory bowel disease
A Nishida, R Inoue, O Inatomi, S Bamba, Y Naito, A Andoh
Clinical Journal of Gastroenterology 2017
Surgery of Complex Abdominal Wall Defects
R Latifi
2017
Bacterial short-chain fatty acid metabolites modulate the inflammatory response against infectious bacteria
RO Corrêa, A Vieira, EM Sernaglia, M Lancellotti, AT Vieira, MJ Avila-Campos, HG Rodrigues, MA Vinolo
Cellular Microbiology 2017
Analysis of Mucosa-Associated Microbiota in Colorectal Cancer
Kehan Xu, Bo Jiang
Medical science monitor : international medical journal of experimental and clinical research 2017
Targeting glucose metabolism for healthy aging
RA Brewer, VK Gibbs, DL Smith
Nutrition and Healthy Aging 2016
Regulation of Vascular and Renal Function by Metabolite Receptors*
J Peti-Peterdi, BK Kishore, JL Pluznick
Annual Review of Physiology 2016
Glucose-independent Acetate Metabolism Promotes Melanoma Cell Survival and Tumor Growth
AJ Lakhter, J Hamilton, RL Konger, N Brustovetsky, HE Broxmeyer, SR Naidu
The Journal of biological chemistry 2016
The metabolic fate of acetate in cancer.
Schug ZT, Vande Voorde J, Gottlieb E
Nature reviews. Cancer 2016
Impact of acute kidney injury on distant organ function: recent findings and potential therapeutic targets
K Doi, H Rabb
Kidney International 2016
Targeting glucose metabolism for healthy aging
RA Brewer, V Gibbs, DL Smith
Nutrition and Healthy Aging 2016
The Human Microbiota and Chronic Disease: Dysbiosis as a Cause of Human Pathology
A Bharwani, P Forsythe
The Human Microbiota and Chronic Disease: Dysbiosis as a Cause of Human Pathology 2016
Branched short-chain fatty acids modulate glucose and lipid metabolism in primary adipocytes
E Heimann, M Nyman, AK Pålbrink, K Lindkvist-Petersson, E Degerman
Adipocyte 2016
Carbohydrates in Food
AC Eliasson
Carbohydrates in Food 2016
Branched short-chain fatty acids modulate glucose and lipid metabolism in primary adipocytes
E Heimann, M Nyman, AK Pålbrink, K Lindkvist-Petersson, E Degerman
Adipocyte 2016
Advances in Microbiology, Infectious Diseases and Public Health
G Donelli
2016
The diet-derived short chain fatty acid propionate improves beta-cell function in humans and stimulates insulin secretion from human islets in vitro: PINGITORE et al
A Pingitore, ES Chambers, T Hill, IR Maldonado, B Liu, G Bewick, DJ Morrison, T Preston, GA Wallis, C Tedford, RC González, GC Huang, P Choudhary, G Frost, SJ Persaud
Diabetes, obesity & metabolism 2016
Short-Chain Fatty Acid Acetate Stimulates Adipogenesis and Mitochondrial Biogenesis via GPR43 in Brown Adipocytes
J Hu, I Kyrou, BK Tan, GK Dimitriadis, M Ramanjaneya, G Tripathi, V Patel, S James, M Kawan, J Chen, HS Randeva
Endocrinology 2016
Probiotics and Bioactive Carbohydrates in Colon Cancer Management
M Raman, P Ambalam, M Doble
2016
Advances in Microbiology, Infectious Diseases and Public Health: Volume 4
G Donelli
2016
Metabolomics – the complementary field in systems biology: a review on obesity and type 2 diabetes
MH Bakar, MR Sarmidi, KK Cheng, AA Khan, CL Suan, HZ Huri, H Yaakob
Molecular BioSystems 2015
The Ontogeny of Brown Adipose Tissue
ME Symonds, M Pope, H Budge
Annual Review of Nutrition 2015
The Microbiome and Cancer: Is the ‘Oncobiome’ Mirage Real?
RM Thomas, C Jobin
Trends in Cancer 2015
A phylo-functional core of gut microbiota in healthy young Chinese cohorts across lifestyles, geography and ethnicities
J Zhang, Z Guo, Z Xue, Z Sun, M Zhang, L Wang, G Wang, F Wang, J Xu, H Cao, H Xu, Q Lv, Z Zhong, Y Chen, S Qimuge, B Menghe, Y Zheng, L Zhao, W Chen, H Zhang
The ISME Journal 2015
Evidence that asthma is a developmental origin disease influenced by maternal diet and bacterial metabolites
AN Thorburn, CI McKenzie, S Shen, D Stanley, L Macia, LJ Mason, LK Roberts, CH Wong, R Shim, R Robert, N Chevalier, JK Tan, E Mariño, RJ Moore, L Wong, MJ McConville, DL Tull, LG Wood, VE Murphy, J Mattes, PG Gibson, CR Mackay
Nature Communications 2015
An Acetate-Specific GPCR, FFAR2, Regulates Insulin Secretion
M Priyadarshini, SR Villa, M Fuller, B Wicksteed, CR Mackay, T Alquier, V Poitout, H Mancebo, RG Mirmira, A Gilchrist, BT Layden
Molecular Endocrinology 2015
Gut Bacteria Products Prevent AKI Induced by Ischemia-Reperfusion
V Andrade-Oliveira, MT Amano, M Correa-Costa, A Castoldi, RJ Felizardo, DC de Almeida, EJ Bassi, PM Moraes-Vieira, MI Hiyane, AC Rodas, JP Peron, CF Aguiar, MA Reis, WR Ribeiro, CJ Valduga, R Curi, MA Vinolo, CM Ferreira, NO Camara
Journal of the American Society of Nephrology : JASN 2015
Prolonged antibiotic treatment induces a diabetogenic intestinal microbiome that accelerates diabetes in NOD mice
K Brown, A Godovannyi, C Ma, YQ Zhang, Z Ahmadi-Vand, C Dai, MA Gorzelak, YK Chan, JM Chan, A Lochner, JP Dutz, BA Vallance, DL Gibson
The ISME Journal 2015
Review article: insights into colonic protein fermentation, its modulation and potential health implications
CK Yao, JG Muir, PR Gibson
Alimentary Pharmacology & Therapeutics 2015
The effect of short-chain fatty acids on human monocyte-derived dendritic cells
C Nastasi, M Candela, CM Bonefeld, C Geisler, M Hansen, T Krejsgaard, E Biagi, MH Andersen, P Brigidi, N Ødum, T Litman, A Woetmann
Scientific Reports 2015
Nutritional Care of the Patient with Gastrointestinal Disease
A Asthana, J Muir, P Gibson
Nutritional Care of the Patient with Gastrointestinal Disease 2015
Gut microbial short-chain fatty acids in host defense and immune regulation
H Ohno
Inflammation and Regeneration 2015
Beneficial Microorganisms in Medical and Health Applications
MT Liong
2015
Chemical and Physical Sensors in the Regulation of Renal Function
JL Pluznick, MJ Caplan
Clinical journal of the American Society of Nephrology : CJASN 2014
Metabolic tinkering by the gut microbiome: Implications for brain development and function
J Selkrig, P Wong, X Zhang, S Pettersson
Gut microbes 2014
A novel SCFA receptor, the microbiota, and blood pressure regulation
J Pluznick
Gut microbes 2014
Microbial view of central nervous system autoimmunity
K Berer, G Krishnamoorthy
FEBS Letters 2014
Acetate metabolism in cancer cells
AM Hosios, MG Heiden
Cancer & Metabolism 2014
Colonic Hydrogen Generated from Fructan Diffuses into the Abdominal Cavity and Reduces Adipose mRNA Abundance of Cytokines in Rats
N Nishimura, H Tanabe, M Adachi, T Yamamoto, M Fukushima
The Journal of nutrition 2013
Renal and cardiovascular sensory receptors and blood pressure regulation
JL Pluznick
American journal of physiology. Renal physiology 2013
The therapeutic potential of GPR43: a novel role in modulating metabolic health
LM Cornall, ML Mathai, DH Hryciw, AJ McAinch
Cellular and Molecular Life Sciences 2013
Lactose malabsorption and colonic fermentations alter host metabolism in rats
V Alexandre, PC Even, C Larue-Achagiotis, JM Blouin, F Blachier, R Benamouzig, D Tomé, AM Davila
British Journal of Nutrition 2013
Fasting serum concentration of short-chain fatty acids in subjects with microscopic colitis and celiac disease: no difference compared with controls, but between genders
G Jakobsdottir, JH Bjerregaard, H Skovbjerg, M Nyman
Scandinavian Journal of Gastroenterology 2013
Dietary Xylooligosaccharide Downregulates IFN-γ and the Low-Grade Inflammatory Cytokine IL-1β Systemically in Mice
CH Hansen, H Frøkiær, AG Christensen, A Bergström, TR Licht, AK Hansen, SB Metzdorff
The Journal of nutrition 2013
The role of the gut microbiota in nutrition and health
HJ Flint, KP Scott, P Louis, SH Duncan
Nature Reviews Gastroenterology & Hepatology 2012
Commensal gut flora and brain autoimmunity: a love or hate affair?
K Berer, G Krishnamoorthy
Acta Neuropathologica 2012
Advances in Applied Microbiology
JL Brooks, KK Jefferson
Advances in applied microbiology 2012
Advances in Immunology
E Pinaud, M Marquet, R Fiancette, S Péron, C Vincent-Fabert, Y Denizot, M Cogné
Advances in Immunology Volume 110 2011
Commensal flora and the regulation of inflammatory and autoimmune responses
J Kranich, KM Maslowski, CR Mackay
Seminars in Immunology 2011
Gut Microbiota Modulate the Metabolism of Brown Adipose Tissue in Mice
R Mestdagh, ME Dumas, S Rezzi, S Kochhar, E Holmes, SP Claus, JK Nicholson
Journal of Proteome Research 2011
Clinical Assessment of Intestinal Failure in Adults
K Kang, G Blackburn
Clinical Management of Intestinal Failure 2011
Free fatty acid receptor 2 and nutrient sensing: a proposed role for fibre, fermentable carbohydrates and short-chain fatty acids in appetite regulation
ML Sleeth, EL Thompson, HE Ford, SE Zac-Varghese, G Frost
Nutrition Research Reviews 2010
Gastric Emptying After Pickle-Juice Ingestion in Rested, Euhydrated Humans
KC Miller, GW Mack, KL Knight
Journal of athletic training 2010
Influence of the type of indigestible carbohydrate on plasma and urine short-chain fatty acid profiles in healthy human volunteers
K Verbeke, V Ferchaud-Roucher, T Preston, AC Small, L Henckaerts, M Krempf, H Wang, RJ Vonk, MG Priebe
European Journal of Clinical Nutrition 2010
Short bowel syndrome
CL Donohoe, JV Reynolds
The Surgeon 2010
Mitochondrial Genetics and Cancer
GD Dakubo
2010
Regulation of inflammatory responses by gut microbiota and chemoattractant receptor GPR43
KM Maslowski, AT Vieira, A Ng, J Kranich, F Sierro, D Yu, HC Schilter, MS Rolph, F Mackay, D Artis, RJ Xavier, MM Teixeira, CR Mackay
Nature 2009
Effects of lifelong intervention with an oligofructose-enriched inulin in rats on general health and lifespan
P Rozan, A Nejdi, S Hidalgo, JF Bisson, D Desor, M Messaoudi
British Journal of Nutrition 2008
Dietary fibre and the gut microbiota
KP Scott, SH Duncan, HJ Flint
Nutrition Bulletin 2008
Sodium Acetate Induces a Metabolic Alkalosis but Not the Increase in Fatty Acid Oxidation Observed Following Bicarbonate Ingestion in Humans
GI Smith, AE Jeukendrup, D Ball
The Journal of nutrition 2007
Carbohydrates in Food, Second Edition
C Edwards, A Parrett, S Khanna
Carbohydrates in Food, Second Edition 2006
The clinical relevance of the metabolism of prostate cancer; zinc and tumor suppression: connecting the dots
LC Costello, RB Franklin
Molecular Cancer 2006
Effect of acetic acid feeding on the circadian changes in glycogen and metabolites of glucose and lipid in liver and skeletal muscle of rats
T Fushimi, Y Sato
British Journal of Nutrition 2005
The potential mechanisms involved in the anti-carcinogenic action of probiotics
D Commane, R Hughes, C Shortt, I Rowland
Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis 2005
Colonic fermentation from lactulose inhibits lipolysis in overweight subjects
V Ferchaud-Roucher, E Pouteau, H Piloquet, Y Zaïr, M Krempf
American journal of physiology. Endocrinology and metabolism 2005
l-Rhamnose increases serum propionate after long-term supplementation, but lactulose does not raise serum acetate
JA Vogt, KB Ishii-Schrade, PB Pencharz, TM Wolever
The American journal of clinical nutrition 2004
l-Rhamnose increases serum propionate in humans
JA Vogt, PB Pencharz, TM Wolever
The American journal of clinical nutrition 2004
A novel bifunctionality: PAT1 and PAT2 mediate electrogenic proton/amino acid and electroneutral proton/fatty acid symport
M Foltz, M Boll, L Raschka, G Kottra, H Daniel
The FASEB Journal 2004
Inflammatory Bowel Disease: From Bench to Bedside
SR Targan, F Shanahan, LC Karp
2003
Whole body and leg acetate kinetics at rest, during exercise and recovery in humans
G Hall, M Sacchetti, G Rådegran
The Journal of Physiology 2002
Metabolic acidosis: separation methods and biological relevance of organic acids and lactic acid enantiomers
JB Ewaschuk, GA Zello, JM Naylor, DR Brocks
Journal of Chromatography B 2002
Food-Derived Carbohydrates — Structural Complexity and Functional Diversity
RN Tharanathan
Critical Reviews in Biotechnology 2002
The Anaplerotic Substrate Alanine Stimulates Acetate Incorporation into Glutamate and Glutamine in Rabbit Kidney Tubules: A 13 C NMR STUDY
A Conjard, S Dugelay, MF Chauvin, D Durozard, G Baverel, G Martin
The Journal of biological chemistry 2002
Handbook of Dietary Fiber
J Marlett
Handbook of Dietary Fiber 2001
Fermentation in the large intestine of single-stomached animals and its relationship to animal health
BA Williams, MW Verstegen, S Tamminga
Nutrition Research Reviews 2001
Short-Chain Fatty Acids and Human Colonic Function: Roles of Resistant Starch and Nonstarch Polysaccharides
DL Topping, PM Clifton
Physiological reviews 2001
Dietary lactulose decreases apparent nitrogen absorption and increases apparent calcium and magnesium absorption in healthy dogs
AC Beynen, HJ Kappert, S Yu
Journal of Animal Physiology and Animal Nutrition 2001
Acetic Acid Feeding Enhances Glycogen Repletion in Liver and Skeletal Muscle of Rats
T Fushimi, K Tayama, M Fukaya, K Kitakoshi, N Nakai, Y Tsukamoto, Y Sato
The Journal of nutrition 2001
Effect of resistant starch on potential biomarkers for colonic cancer risk in patients with colonic adenomas: a controlled trial
M J Grubben, C C van den Braak, M Essenberg, M Olthof, A Tangerman, M B Katan, F M Nagengast
Digestive Diseases and Sciences 2001
The Human Gut Bacteria Bacteroides thetaiotaomicron and Fusobacterium varium Produce Putrescine and Spermidine in Cecum of Pectin-Fed Gnotobiotic Rats
J Noack, G Dongowski, L Hartmann, M Blaut
The Journal of nutrition 2000
Acetic Acid Suppresses the Increase in Disaccharidase Activity That Occurs during Culture of Caco-2 Cells
N Ogawa, H Satsu, H Watanabe, M Fukaya, Y Tsukamoto, Y Miyamoto, M Shimizu
The Journal of nutrition 2000
Methane producing status increases serum acetate and lipids in subjects with impaired glucose tolerance
J Fernandes, AV Rao, TM Wolever
Nutrition Research 1999
Nutritional Biochemistry
T Brody
The Journal of Nutritional Biochemistry 1999
Effects of inulin on faecal bifidobacteria in human subjects
HP Kruse, B Kleessen, M Blaut
British Journal of Nutrition 1999
Consumption of fructooligosaccharides does not favorably affect blood glucose and serum lipid concentrations in patients with type 2 diabetes
MS Alles, NM de Roos, JC Bakx, E van de Lisdonk, PL Zock, JG Hautvast
The American journal of clinical nutrition 1999
Impact of Nondigestible Carbohydrates on Serum Lipoproteins and Risk for Cardiovascular Disease
JW Anderson, TJ Hanna
The Journal of nutrition 1999
Functional food science and gastrointestinal physiology and function
S Salminen, C Bouley, MC Boutron, JH Cummings, A Franck, GR Gibson, E Isolauri, MC Moreau, M Roberfroid, I Rowland
British Journal of Nutrition 1998
Weaning piglets, microbial fermentation, short chain fatty acids and diarrhoea
HM Beers‐Schreurs, MJ Nabuurs, L Vellenga, HJ der Valk, T Wensing, HJ Breukink
Veterinary Quarterly 1998
Regional acetate kinetics and oxidation in human volunteers
B Mittendorfer, LS Sidossis, E Walser, DL Chinkes, RR Wolfe
American journal of physiology. Endocrinology and metabolism 1998
Increased Serum Cholesterol in Healthy Human Methane Producers Is Confounded by Age
J Fernandes, TM Wolever, AV Rao
The Journal of nutrition 1998
Time of day and glucose tolerance status affect serum short-chain fatty concentrations in humans
TM Wolever, RG Josse, LA Leiter, JL Chiasson
Metabolism 1997
Psyllium and methylcellulose fermentation properties in relation to insoluble and soluble fiber standards
JM Campbell, GC Fahey
Nutrition Research 1997
The effect of alimentary polyamine depletion on germ-free and conventional rats
J Noack, B Kleessen, A Lorenz, M Blaut
The Journal of Nutritional Biochemistry 1996
Digestion and physiological properties of resistant starch in the human large bowel
JH Cummings, ER Beatty, SM Kingman, SA Bingham, HN Englyst
British Journal of Nutrition 1996
In vivo studies of amylose- and ethylcellulose-coated [13C]glucose microspheres as a model for drug delivery to the colon
JH Cummings, S Milojevic, M Harding, WA Coward, GR Gibson, RL Botham, SG Ring, EP Wraight, MA Stockham, MC Allwood, JM Newton
Journal of Controlled Release 1996
Effect of guar gum on glucose metabolism in cecectomized rats
Y Nagata, M Murase, Y Kimura, K Ebihara
The Journal of Nutritional Biochemistry 1996
Selective stimulation of bifidobacteria in the human colon by oligofructose and inulin
GR Gibson, ER Beatty, X Wang, JH Cummings
Gastroenterology 1995
Replacement of digestible by resistant starch lowers diet-induced thermogenesis in healthy men
ML Heijnen, P Deurenberg, JM van Amelsvoort, AC Beynen
British Journal of Nutrition 1995
Fecal short chain fatty acids in South African Urban Africans and whites
I Segal, H Hassan, AR Walker, P Becker, J Braganza
Diseases of the Colon & Rectum 1995
Colonic Fermentation of Complex Dietary Carbohydrates in Short-Bowel Patients: No Association with Hydrogen Excretion and Fecal and Plasma Short-Chain Fatty Acids
I Nordgaard, BS Hansen, PB Mortensen
Scandinavian Journal of Gastroenterology 1995
Dietary Fiber
BO Schneeman, LF Tinker
Pediatric Clinics of North America 1995
Hydrogen Breath Test in Foals
V Bracher, JC Ousey, AR Fazeli, P Murgatroyd, PD Rossdale
Biology of reproduction 1995
Breath tests for investigation of gastrointestinal disease
V Bracher, SJ Baker
Equine Veterinary Education 1994
Pharmacology of dietary fibre
RC Spiller
Pharmacology & Therapeutics 1994
Metabolism of Lactose in the Human Body
H Arola, A Tamm
Scandinavian Journal of Gastroenterology 1994
Carbohydrate fermentation decreases hepatic glucose output in healthy subjects
A Thorburn, J Muir, J Proietto
Metabolism 1993
Effects of colonic fermentation on respiratory gas exchanges following a glucose load in man
P Ritz, D Cloarec, M Beylot, M Champ, B Charbonnel, S Normand, M Krempf
Metabolism 1993
Ileal pH and apparent absorption of magnesium in rats fed on diets containing either lactose or lactulose
AM Heijnen, EJ Brink, AG Lemmens, AC Beynen
British Journal of Nutrition 1993
Technological treatments of cereals. Repercussions on the physiological properties of starch
F Bornet
Carbohydrate Polymers 1993
Dietary fiber, inulin, and oligofructose: A review comparing their physiological effects
M Roberfroid
Critical Reviews in Food Science and Nutrition 1993
Factors affecting the distribution of ingested propionic acid in the rat forestomach
JE Bueld, KJ Netter
Food and Chemical Toxicology 1993
Estimation of short-chain fatty acid production from protein by human intestinal bacteria based on branched-chain fatty acid measurements
GT Macfarlane, GR Gibson, E Beatty, JH Cummings
FEMS Microbiology Ecology 1992
The effect of oral-administered lactulose on colonic nitrogen metabolism and excretion
PB Mortensen
Hepatology 1992
Hepatic Encephalopathy
JE Maddison
Journal of Veterinary Internal Medicine 1992
Effects of acarbose on starch hydrolysis
M Hiele, Y Ghoos, P Rutgeerts, G Vantrappen
Digestive Diseases and Sciences 1992
An in vitro study of short-chain fatty acid concentrations, production and absorption in pig (Sus scrofa) colon
K Holtug, HS Rasmussen, PB Mortensen
Comparative Biochemistry and Physiology Part A: Physiology 1992
Simple and rapid method for determination of short-chain fatty acids in biological materials by high-performance liquid chromatography with ultraviolet detection
J Stein, J Kulemeier, B Lembcke, WF Caspary
Journal of Chromatography B: Biomedical Sciences and Applications 1992
Production, metabolism, and excretion of hydrogen in the large intestine
SU Christl, PR Murgatroyd, GR Gibson, JH Cummings
Gastroenterology 1992
Systemic and regional acetate kinetics in dogs
B Bleiberg, TR Beers, M Persson, JM Miles
American journal of physiology. Endocrinology and metabolism 1992
Effect of Short-Chain Fatty Acids on the Human Colonic Mucosa in Vitro
W Scheppach, P Bartram, A Richter, F Richter, H Liepold, G Dusel, G Hofstetter, J Rüthlein, H Kasper
JPEN. Journal of parenteral and enteral nutrition 1992
Portal and peripheral blood short chain fatty acid concentrations after caecal lactulose instillation at surgery
SG Peters, EW Pomare, CA Fisher
Gut 1992
Role of dietary sulphate in the regulation of methanogenesis in the human large intestine
SU Christl, GR Gibson, JH Cummings
Gut 1992
Dietary Fibre — A Component of Food
TF Schweizer, CA Edwards
1992
Effects of acarbose on starch hydrolysis: study in healthy subjects, ileostomy patients, andIn Vitro
M Hiele, Y Ghoos, P Rutgeerts, G Vantrappen
Digestive Diseases and Sciences 1992
Serum levels of short-chain fatty acids in cirrhosis and hepatic coma
MR Clausen, PB Mortensen, F Bendtsen
Hepatology 1991
The control and consequences of bacterial fermentation in the human colon
JH Cummings, GT Macfarlane
Journal of Applied Microbiology 1991
Digestion by pigs of non-starch polysaccharides in wheat and raw peas (Pisum sativum) fed in mixed diets
JS Goodlad, JC Mathers
British Journal of Nutrition 1991
Soluble Fiber Polysaccharides: Effects on Plasma Cholesterol and Colonic Fermentation
DL Topping
Nutrition Reviews 1991
Measurement of plasma acetate kinetics using high-performance liquid chromatography
M Persson, B Bleiberg, D Kiss, J Miles
Analytical Biochemistry 1991
Use of breath hydrogen to quantify carbohydrate malabsorption: Lack of effect of soluble fibre (guar)
PA Robb, TM Wolever, J Hassanein
Nutrition Research 1991
Relationship between foods of varying fermentability and colonically derived blood acetate
D Royall, TM Wolever
Nutrition Research 1991
Management of the Short-bowel Syndrome
SJ Dudrick, R Latifi, DE Fosnocht
Surgical Clinics of North America 1991
Influence of nutritional substrates on the formation of volatiles by the fecal flora
M Hiele, Y Ghoos, P Rutgeerts, G Vantrappen, D Schoorens
Gastroenterology 1991
Dietary Fibre: Chemical and Biological Aspects
D Kritchevsky
Dietary Fibre: Chemical and Biological Aspects 1990
Measurement of stable isotopic enrichment of underivatized acetate by gas chromatography/mass spectrometry: Application toin vivo estimation of acetate production
CL Kien, DH Chang, RD Murray, A Ailabouni, J Kepner
Biological Mass Spectrometry 1990
Diagnosis of cobalamin deficiency: II. Relative sensitivities of serum cobalamin, methylmalonic acid, and total homocysteine concentrations
J Lindenbaum, DG Savage, SP Stabler, RH Allen
American Journal of Hematology 1990
Effect of lactulose on the metabolism of short-chain fatty acids
M Uribe, O Campollo, C Cote
Hepatology 1990
Dietary fiber and coronary heart disease
JW Anderson, DA Deakins, TL Floore, BM Smith, SE Whitis
Critical Reviews in Food Science and Nutrition 1990
Effects of bacterial fermentation end products on intestinal function: Implications for intestinal dysfunction
RD Murray
The Journal of Pediatrics 1990
Pyruvate sparing by butyrate and propionate in proliferating colonic epithelium
RN Butler, I Stafford, E Triantafillos, CD O'Dee, IG Jarrett, MJ Fettman, IC Roberts-Thomson
Comparative Biochemistry and Physiology Part B: Comparative Biochemistry 1990
Malnutrition in Chronic Diet-Associated Infantile Diarrhea
CH Lifschitz
Malnutrition in Chronic Diet-Associated Infantile Diarrhea 1990
The degradation of amino acids, proteins, and blood to short-chain fatty acids in colon is prevented by lactulose
PB Mortensen, K Holtug, H Bonnén, MR Clausen
Gastroenterology 1990
Interval sampling of end-expiratory hydrogen (H2) concentrations to quantify carbohydrate malabsorption by means of lactulose standards
JJ Rumessen, O Hamberg, E Gudmand-Hoyer
Gut 1990
Cirrhosis, Hepatic Encephalopathy, and Ammonium Toxicity
S Grisolía, V Felipo, MD Miñana
1990
New Developments in Dietary Fiber
I Furda, CJ Brine
1990
Increased concentrations of liver cholesterol in rats fed lactulose (Short communication)
AC Beynen
Food / Nahrung 1989
Effect of Dietary Fiber on the Texture and Cooking Characteristics of Restructured Pork
SL Todd, FE Cunningham, JR Claus, JR Schwenke
Journal of Food Science 1989
Dietary Starches and Sugars in Man: A Comparison
J Dobbing
1989
The Regulatory and Protective Role of the Normal Microflora
R Grubb, T Midtvedt, E Norin
1989
Dietary Therapy of Steatorrhea
RB Marotta, MH Floch
Gastroenterology Clinics of North America 1989
Role of the Gut Flora in Toxicity and Cancer
O Wrong
Role of the Gut Flora in Toxicity and Cancer 1988
Lactulose detoxifies in vitro short-chain fatty acid production in colonic contents induced by blood: Implications for hepatic coma
PB Mortensen, HS Rasmussen, K Holtug
Gastroenterology 1988
The Effect of Starch Malabsorption on Fecal Short-Chain Fatty Acid Excretion in Man
W Scheppach, C Fabian, M Sachs, H Kasper
Scandinavian Journal of Gastroenterology 1988
Invited Comment: Use of Acetate in Total Parenteral Nutrition Solutions
DD Lazarus, TP Stein
JPEN. Journal of parenteral and enteral nutrition 1988
Breath methane and large bowel cancer risk in contrasting African populations
I Segal, AR Walker, S, JH Cummings
Gut 1988
Effect of human faecal inoculum on in vitro fermentation variables
MI McBurney, LU Thompson
British Journal of Nutrition 1987
Is the diarrhoea in ulcerative colitis related to impaired colonic salvage of carbohydrate?
SS Rao, NW Read, CD Holdsworth
Gut 1987
Effect of dietary fiber on colonic cell proliferation and its relationship to colon carcinogenesis
LR Jacobs
Preventive Medicine 1987
Dietary Fiber and the Risk of Cancer
ME MB
Nutrition Reviews 1987
Occurrence, absorption and metabolism of short chain fatty acids in the digestive tract of mammals
M Bugaut
Comparative Biochemistry and Physiology Part B: Comparative Biochemistry 1987
Enteral and Parenteral Nutrition in Patients with Enteric Fistulas and Short Bowel Syndrome
JL Rambeau, RH Rolandelli
Surgical Clinics of North America 1987
Short-Chain Fatty Acids and Succinate in Feces of Healthy Human Volunteers and Their Correlation with Anaerobe Cultural Counts
GJ Meijer-Severs, EV Santen
Scandinavian Journal of Gastroenterology 1987
Short chain fatty acids in human large intestine, portal, hepatic and venous blood
JH Cummings, EW Pomare, WJ Branch, CP Naylor, GT Macfarlane
Gut 1987
The Role of Carbohydrates in Lower Gut Function
JH Cummings, HN Englyst, HS Wiggins
Nutrition Reviews 1986

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