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The head and neck cancer immune landscape and its immunotherapeutic implications
Rajarsi Mandal, Yasin Şenbabaoğlu, Alexis Desrichard, Jonathan J. Havel, Martin G. Dalin, Nadeem Riaz, Ken-Wing Lee, Ian Ganly, A. Ari Hakimi, Timothy A. Chan, Luc G.T. Morris
Rajarsi Mandal, Yasin Şenbabaoğlu, Alexis Desrichard, Jonathan J. Havel, Martin G. Dalin, Nadeem Riaz, Ken-Wing Lee, Ian Ganly, A. Ari Hakimi, Timothy A. Chan, Luc G.T. Morris
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Research Article Immunology Oncology

The head and neck cancer immune landscape and its immunotherapeutic implications

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Abstract

Recent clinical trials have demonstrated a clear survival advantage in advanced head and neck squamous cell carcinoma (HNSCC) patients treated with immune checkpoint blockade. These emerging results reveal that HNSCC is one of the most promising frontiers for immunotherapy research. However, further progress in head and neck immuno-oncology will require a detailed understanding of the immune infiltrative landscape found in these tumors. We leveraged transcriptome data from 280 tumors profiled by The Cancer Genome Atlas (TCGA) to comprehensively characterize the immune landscape of HNSCC in order to develop a rationale for immunotherapeutic strategies in HNSCC and guide clinical investigation. We find that both HPV+ and HPV– HNSCC tumors are among the most highly immune-infiltrated cancer types. Strikingly, HNSCC had the highest median Treg/CD8+ T cell ratio and the highest levels of CD56dim NK cell infiltration, in our pan-cancer analysis of the most immune-infiltrated tumors. CD8+ T cell infiltration and CD56dim NK cell infiltration each correlated with superior survival in HNSCC. Tumors harboring genetic smoking signatures had lower immune infiltration and were associated with poorer survival, suggesting these patients may benefit from immune agonist therapy. These findings illuminate the immune landscape of HPV+ and HPV– HNSCC. Additionally, this landscape provides a potentially novel rationale for investigation of agents targeting modulators of Tregs (e.g., CTLA-4, GITR, ICOS, IDO, and VEGFA) and NK cells (e.g., KIR, TIGIT, and 4-1BB) as adjuncts to anti–PD-1 in the treatment of advanced HNSCC.

Authors

Rajarsi Mandal, Yasin Şenbabaoğlu, Alexis Desrichard, Jonathan J. Havel, Martin G. Dalin, Nadeem Riaz, Ken-Wing Lee, Ian Ganly, A. Ari Hakimi, Timothy A. Chan, Luc G.T. Morris

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Figure 1

The immune landscape of head and neck squamous cell carcinoma (HNSCC).

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The immune landscape of head and neck squamous cell carcinoma (HNSCC).
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(A) Single-sample gene set enrichment analysis for 280 HNSCC tumor samples identifying relative expression of immune cell populations clustered into immune-high and -low phenotypes. (B) Relative cytolytic (CYT) activity, IFN-γ expression, and CD8+/Treg ratios between immune-high and -low tumors clustered by overall immune cell infiltration. (C) Correlations between relative IFN-γ expression and immune infiltration characterized by T cell infiltration score (TIS) and immune cell infiltration score (IIS) in HPV-positive and -negative tumors. (D) Relative TIS, Treg, and CD8+/Treg ratios stratified by head and neck tumor subsite. (E) Relative TIS, IIS, IFN-γ expression, and CYT activity between HNSCC gene expression subtypes. All box-and-whisker plots represent values within the interquartile range (IQR) (boxes) and 1.5 × IQR (whiskers). Outliers are plotted as values > 1.5 × IQR (circles) and > 3 × IQR (stars). All P values for significance (<0.05) represent comparisons via 2-tailed t tests and 1-way ANOVA for continuous comparisons. All r values represent Pearson correlation coefficients. n = 280. APM, antigen-processing machinery.

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ISSN 2379-3708

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