ARID1A loss impairs enhancer-mediated gene regulation and drives colon cancer in mice

R Mathur, BH Alver, AK San Roman, BG Wilson… - Nature …, 2017 - nature.com
R Mathur, BH Alver, AK San Roman, BG Wilson, X Wang, AT Agoston, PJ Park
Nature genetics, 2017nature.com
Genes encoding subunits of SWI/SNF (BAF) chromatin-remodeling complexes are
collectively mutated in∼ 20% of all human cancers,. Although ARID1A is the most frequent
target of mutations, the mechanism by which its inactivation promotes tumorigenesis is
unclear. Here we demonstrate that Arid1a functions as a tumor suppressor in the mouse
colon, but not the small intestine, and that invasive ARID1A-deficient adenocarcinomas
resemble human colorectal cancer (CRC). These tumors lack deregulation of APC/β-catenin …
Abstract
Genes encoding subunits of SWI/SNF (BAF) chromatin-remodeling complexes are collectively mutated in ∼20% of all human cancers,. Although ARID1A is the most frequent target of mutations, the mechanism by which its inactivation promotes tumorigenesis is unclear. Here we demonstrate that Arid1a functions as a tumor suppressor in the mouse colon, but not the small intestine, and that invasive ARID1A-deficient adenocarcinomas resemble human colorectal cancer (CRC). These tumors lack deregulation of APC/β-catenin signaling components, which are crucial gatekeepers in common forms of intestinal cancer. We find that ARID1A normally targets SWI/SNF complexes to enhancers, where they function in coordination with transcription factors to facilitate gene activation. ARID1B preserves SWI/SNF function in ARID1A-deficient cells, but defects in SWI/SNF targeting and control of enhancer activity cause extensive dysregulation of gene expression. These findings represent an advance in colon cancer modeling and implicate enhancer-mediated gene regulation as a principal tumor-suppressor function of ARID1A.
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