[HTML][HTML] hnRNP A1 and hnRNP F modulate the alternative splicing of exon 11 of the insulin receptor gene

I Talukdar, S Sen, R Urbano, J Thompson, JR Yates III… - PloS one, 2011 - journals.plos.org
PloS one, 2011journals.plos.org
Exon 11 of the insulin receptor gene (INSR) is alternatively spliced in a developmentally and
tissue-specific manner. Linker scanning mutations in a 5′ GA-rich enhancer in intron 10
identified AGGGA sequences that are important for enhancer function. Using RNA-affinity
purification and mass spectrometry, we identified hnRNP F and hnRNP A1 binding to these
AGGGA sites and also to similar motifs at the 3′ end of the intron. The hnRNPs have
opposite functional effects with hnRNP F promoting and hnRNP A1 inhibiting exon 11 …
Exon 11 of the insulin receptor gene (INSR) is alternatively spliced in a developmentally and tissue-specific manner. Linker scanning mutations in a 5′ GA-rich enhancer in intron 10 identified AGGGA sequences that are important for enhancer function. Using RNA-affinity purification and mass spectrometry, we identified hnRNP F and hnRNP A1 binding to these AGGGA sites and also to similar motifs at the 3′ end of the intron. The hnRNPs have opposite functional effects with hnRNP F promoting and hnRNP A1 inhibiting exon 11 inclusion, and deletion of the GA-rich elements eliminates both effects. We also observed specific binding of hnRNP A1 to the 5′ splice site of intron 11. The SR protein SRSF1 (SF2/ASF) co-purified on the GA-rich enhancer and, interestingly, also competes with hnRNP A1 for binding to the splice site. A point mutation -3U→C decreases hnRNP A1 binding, increases SRSF1 binding and renders the exon constitutive. Lastly, our data point to a functional interaction between hnRNP F and SRSF1 as a mutant that eliminates SRSF1 binding to exon 11, or a SRSF1 knockdown, which prevents the stimulatory effect of hnRNP F over expression.
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