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Single-cell multiomic analysis identifies macrophage subpopulations in promoting cardiac repair
Mingzhu Fu, … , Yulong Zhong, Shanshan Ai
Mingzhu Fu, … , Yulong Zhong, Shanshan Ai
Published August 27, 2024
Citation Information: J Clin Invest. 2024;134(19):e175297. https://doi.org/10.1172/JCI175297.
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Research Article Cardiology

Single-cell multiomic analysis identifies macrophage subpopulations in promoting cardiac repair

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Abstract

Cardiac mononuclear phagocytic cells (Cardiac MPCs) participate in maintaining homeostasis and orchestrating cardiac responses upon injury. However, the function of specific MPC subtypes and the related cell fate commitment mechanisms remain elusive in regenerative and nonregenerative hearts due to their cellular heterogeneities. Using spatiotemporal single-cell epigenomic analysis of cardiac MPCs in regenerative (P1) and nonregenerative (P10) mouse hearts after injury, we found that P1 hearts accumulate reparative Arg1+ macrophages, while proinflammatory S100a9+Ly6c+ monocytes are uniquely abundant during nonregenerative remodeling. Moreover, blocking chemokine CXCR2 to inhibit the specification of the S100a9+Ly6c+-biased inflammatory fate in P10 hearts resulted in elevated wound repair responses and marked improvements in cardiac function after injury. Single-cell RNA-Seq further confirmed an increased Arg1+ macrophage subpopulation after CXCR2 blockade, which was accomplished by increased expression of wound repair–related genes and reduced expression of proinflammatory genes. Collectively, our findings provide instructive insights into the molecular mechanisms underlying the function and fate specification of heterogeneous MPCs during cardiac repair and identify potential therapeutic targets for myocardial infarction.

Authors

Mingzhu Fu, Shengtao Jia, Longhui Xu, Xin Li, Yufang Lv, Yulong Zhong, Shanshan Ai

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Figure 1

Single-cell H3K27ac ChIP-Seq of MPCs in hearts at 3 and 7 days after P1 and P10 MI/sham.

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Single-cell H3K27ac ChIP-Seq of MPCs in hearts at 3 and 7 days after P1 ...
(A) Schematic representation of the experimental design. (B) UMAP plot of 5,226 cardiac CD45+F4/80+ MPCs identified 9 different clusters. (C) Heatmap showing normalized cell-type specific H3K27ac ChIP-Seq signals and representative nearby genes were labeled for each subcluster. (D) Genome browser view of H3K27ac signals around cluster-specific marker genes. (E) Dot plot showing the enhancer score of nearby genes participating in typical functions among all clusters.

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ISSN: 0021-9738 (print), 1558-8238 (online)

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