A sensitive array for microRNA expression profiling (miChip) based on locked nucleic acids (LNA)

M Castoldi, S Schmidt, V Benes, M Noerholm… - Rna, 2006 - rnajournal.cshlp.org
Rna, 2006rnajournal.cshlp.org
MicroRNAs represent a class of short (∼ 22 nt), noncoding regulatory RNAs involved in
development, differentiation, and metabolism. We describe a novel microarray platform for
genome-wide profiling of mature miRNAs (miChip) using locked nucleic acid (LNA)-modified
capture probes. The biophysical properties of LNA were exploited to design probe sets for
uniform, high-affinity hybridizations yielding highly accurate signals able to discriminate
between single nucleotide differences and, hence, between closely related miRNA family …
MicroRNAs represent a class of short (∼22 nt), noncoding regulatory RNAs involved in development, differentiation, and metabolism. We describe a novel microarray platform for genome-wide profiling of mature miRNAs (miChip) using locked nucleic acid (LNA)-modified capture probes. The biophysical properties of LNA were exploited to design probe sets for uniform, high-affinity hybridizations yielding highly accurate signals able to discriminate between single nucleotide differences and, hence, between closely related miRNA family members. The superior detection sensitivity eliminates the need for RNA size selection and/or amplification. MiChip will greatly simplify miRNA expression profiling of biological and clinical samples.
rnajournal.cshlp.org